Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   RC41_RS01725 Genome accession   NZ_CP010483
Coordinates   312574..313011 (+) Length   145 a.a.
NCBI ID   WP_059110744.1    Uniprot ID   A0A5T1D4E0
Organism   Campylobacter jejuni strain CJ677CC535     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307574..318011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC41_RS01705 (RC41_01715) kdpD 308062..309993 (+) 1932 WP_002932500.1 sensor histidine kinase KdpD -
  RC41_RS01710 (RC41_01720) uvrB 309988..311961 (-) 1974 WP_002932502.1 excinuclease ABC subunit UvrB -
  RC41_RS01715 (RC41_01725) - 312115..312345 (+) 231 WP_002852327.1 hypothetical protein -
  RC41_RS01720 (RC41_01730) - 312335..312577 (+) 243 WP_002854947.1 hypothetical protein -
  RC41_RS01725 (RC41_01735) Cj0683 312574..313011 (+) 438 WP_059110744.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RC41_RS01730 (RC41_01740) priA 312993..314846 (+) 1854 WP_002932503.1 primosomal protein N' -
  RC41_RS08695 - 314839..314982 (-) 144 Protein_338 sugar nucleotidyltransferase -
  RC41_RS08700 - 314954..315109 (+) 156 WP_079756590.1 methyl-accepting chemotaxis protein -
  RC41_RS01735 (RC41_01745) - 315233..315742 (-) 510 WP_002934116.1 DUF2393 family protein -
  RC41_RS01740 (RC41_01750) - 315742..316272 (-) 531 WP_002934113.1 DUF2393 domain-containing protein -
  RC41_RS01745 (RC41_01755) - 316285..317373 (-) 1089 WP_002861052.1 prohibitin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16825.86 Da        Isoelectric Point: 8.0993

>NTDB_id=138090 RC41_RS01725 WP_059110744.1 312574..313011(+) (Cj0683) [Campylobacter jejuni strain CJ677CC535]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDFKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=138090 RC41_RS01725 WP_059110744.1 312574..313011(+) (Cj0683) [Campylobacter jejuni strain CJ677CC535]
ATGAATAAAGCTTTTACTTTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTTTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1D4E0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993

Multiple sequence alignment