Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SAST38_RS08150 Genome accession   NZ_CP012972
Coordinates   1655608..1656882 (+) Length   424 a.a.
NCBI ID   WP_000102740.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST20130938     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1650608..1661882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAST38_RS08120 (SAST38_01704) mnmA 1650810..1651928 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  SAST38_RS08125 (SAST38_01705) - 1651929..1653071 (-) 1143 WP_000409174.1 cysteine desulfurase family protein -
  SAST38_RS08130 (SAST38_01706) - 1653383..1654396 (+) 1014 WP_000985872.1 LLM class flavin-dependent oxidoreductase -
  SAST38_RS08135 (SAST38_03335) - 1654633..1654779 (-) 147 WP_000009238.1 SAS049 family protein -
  SAST38_RS08140 (SAST38_01709) - 1654819..1655001 (-) 183 WP_000752909.1 CsbD family protein -
  SAST38_RS08145 (SAST38_01710) cymR 1655101..1655523 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  SAST38_RS08150 (SAST38_03336) rarA 1655608..1656882 (+) 1275 WP_000102740.1 replication-associated recombination protein A Machinery gene
  SAST38_RS08155 (SAST38_01712) - 1657043..1657816 (-) 774 WP_000682646.1 ThiF family adenylyltransferase -
  SAST38_RS08160 (SAST38_01713) - 1657816..1657944 (-) 129 WP_001808243.1 hypothetical protein -
  SAST38_RS08170 (SAST38_01714) aspS 1658277..1660043 (-) 1767 WP_000044799.1 aspartate--tRNA ligase -
  SAST38_RS08175 (SAST38_01715) hisS 1660059..1661321 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47264.84 Da        Isoelectric Point: 8.3539

>NTDB_id=137919 SAST38_RS08150 WP_000102740.1 1655608..1656882(+) (rarA) [Staphylococcus aureus strain ST20130938]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=137919 SAST38_RS08150 WP_000102740.1 1655608..1656882(+) (rarA) [Staphylococcus aureus strain ST20130938]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCTTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(175-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686