Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | RB98_RS05025 | Genome accession | NZ_CP010461 |
| Coordinates | 949016..949318 (+) | Length | 100 a.a. |
| NCBI ID | WP_002932767.1 | Uniprot ID | A0A5T1CZF9 |
| Organism | Campylobacter jejuni strain CJ677CC013 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 944016..954318
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RB98_RS05000 (RB98_04995) | rpsR | 944378..944638 (+) | 261 | WP_059117862.1 | 30S ribosomal protein S18 | - |
| RB98_RS05005 (RB98_05000) | lon | 944699..947074 (-) | 2376 | WP_002866098.1 | endopeptidase La | - |
| RB98_RS05010 (RB98_05005) | - | 947091..947738 (-) | 648 | WP_002877748.1 | outer membrane protein assembly factor BamD | - |
| RB98_RS05015 (RB98_05010) | fliW | 947899..948288 (+) | 390 | WP_002852982.1 | flagellar assembly protein FliW | - |
| RB98_RS05020 (RB98_05015) | proC | 948288..949019 (+) | 732 | WP_002932769.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| RB98_RS05025 (RB98_05020) | ctsT | 949016..949318 (+) | 303 | WP_002932767.1 | transformation system protein | Machinery gene |
| RB98_RS05030 (RB98_05025) | - | 949315..949977 (+) | 663 | WP_002866103.1 | hypothetical protein | - |
| RB98_RS05035 (RB98_05030) | - | 949974..950426 (+) | 453 | WP_002869049.1 | hypothetical protein | - |
| RB98_RS05040 (RB98_05035) | hemD | 950423..951052 (-) | 630 | WP_002932761.1 | uroporphyrinogen-III synthase | - |
| RB98_RS05045 (RB98_05040) | thiE | 951030..951662 (-) | 633 | WP_002932757.1 | thiamine phosphate synthase | - |
| RB98_RS05050 (RB98_05045) | thiD | 951652..952464 (-) | 813 | WP_002869047.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| RB98_RS05055 (RB98_05050) | - | 952461..953147 (-) | 687 | WP_002932755.1 | 3-methyladenine DNA glycosylase | - |
| RB98_RS05060 (RB98_05055) | - | 953144..953905 (-) | 762 | WP_002932753.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12120.19 Da Isoelectric Point: 6.2957
>NTDB_id=137541 RB98_RS05025 WP_002932767.1 949016..949318(+) (ctsT) [Campylobacter jejuni strain CJ677CC013]
MKKAFILIESISAITIISLIFIGIFYYYAQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYYYAQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=137541 RB98_RS05025 WP_002932767.1 949016..949318(+) (ctsT) [Campylobacter jejuni strain CJ677CC013]
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATGCTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATGCTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
99 |
100 |
0.99 |