Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   RC10_RS06410 Genome accession   NZ_CP010459
Coordinates   1219248..1219763 (-) Length   171 a.a.
NCBI ID   WP_059110753.1    Uniprot ID   A0A5T1D046
Organism   Campylobacter jejuni strain CJ677CC047     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1214248..1224763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC10_RS06395 (RC10_06395) - 1214345..1216079 (-) 1735 Protein_1250 flagellin A -
  RC10_RS06400 (RC10_06400) - 1216162..1217988 (-) 1827 WP_002934395.1 motility associated factor glycosyltransferase family protein -
  RC10_RS06405 (RC10_06405) - 1217998..1219248 (-) 1251 WP_002934394.1 DUF2920 family protein -
  RC10_RS06410 (RC10_06410) ctsG 1219248..1219763 (-) 516 WP_059110753.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RC10_RS06415 (RC10_06415) tsaD 1219764..1220771 (-) 1008 WP_002934392.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  RC10_RS06420 (RC10_06420) - 1220768..1222162 (-) 1395 WP_002934391.1 M99 family carboxypeptidase catalytic domain-containing protein -
  RC10_RS06425 (RC10_06425) dxr 1222164..1223234 (-) 1071 WP_002934390.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  RC10_RS06430 (RC10_06430) cdsA 1223231..1223956 (-) 726 WP_002934389.1 phosphatidate cytidylyltransferase -
  RC10_RS06435 (RC10_06435) - 1223965..1224303 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18722.62 Da        Isoelectric Point: 6.4683

>NTDB_id=137494 RC10_RS06410 WP_059110753.1 1219248..1219763(-) (ctsG) [Campylobacter jejuni strain CJ677CC047]
MRKAFTILELVFVIVILGILAAIALLKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGIENVDLSN
FNGVKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=137494 RC10_RS06410 WP_059110753.1 1219248..1219763(-) (ctsG) [Campylobacter jejuni strain CJ677CC047]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTAGGAATTTTAGCTGCTATTGCTTTGCTAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAATAATCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGACCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGATTGAAAATGTCGATCTTAGTAAT
TTTAACGGCGTAAAAGAAGTAAATTTTCGTGTAGGTGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAGGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGCGTGATCTTAAGCAAGAATGAAAATTTTAAAAATCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1D046

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.737

100

0.947

Multiple sequence alignment