Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   APQ97_RS10400 Genome accession   NZ_CP012911
Coordinates   2080635..2080943 (-) Length   102 a.a.
NCBI ID   WP_002936549.1    Uniprot ID   -
Organism   Streptococcus suis strain NSUI060     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2075635..2085943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ97_RS10370 (APQ97_10365) - 2076336..2076887 (-) 552 WP_014636756.1 folate family ECF transporter S component -
  APQ97_RS10375 (APQ97_10370) - 2077202..2078389 (-) 1188 WP_002936543.1 acetate kinase -
  APQ97_RS10380 (APQ97_10375) comGH 2078439..2079392 (-) 954 WP_002936545.1 class I SAM-dependent methyltransferase Machinery gene
  APQ97_RS10385 (APQ97_10380) comGG 2079449..2079859 (-) 411 WP_002936546.1 competence type IV pilus minor pilin ComGG -
  APQ97_RS10390 (APQ97_10385) comGF/cglF 2079837..2080271 (-) 435 WP_002936547.1 competence type IV pilus minor pilin ComGF Machinery gene
  APQ97_RS10395 (APQ97_10390) comGE 2080258..2080551 (-) 294 WP_002936548.1 competence type IV pilus minor pilin ComGE Machinery gene
  APQ97_RS10400 (APQ97_10395) comGD/cglD 2080635..2080943 (-) 309 WP_002936549.1 competence type IV pilus minor pilin ComGD Machinery gene
  APQ97_RS10405 (APQ97_10400) comGC 2080924..2081205 (-) 282 WP_002936550.1 competence type IV pilus major pilin ComGC Machinery gene
  APQ97_RS10410 (APQ97_10405) comGB 2081207..2082079 (-) 873 WP_053866392.1 type II secretion system F family protein Machinery gene
  APQ97_RS10415 (APQ97_10410) comGA 2081991..2082941 (-) 951 WP_002936562.1 competence type IV pilus ATPase ComGA Machinery gene
  APQ97_RS10420 (APQ97_10415) - 2083027..2083977 (+) 951 WP_002936565.1 S66 peptidase family protein -
  APQ97_RS10425 (APQ97_10420) - 2084012..2084377 (-) 366 WP_002936568.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11523.25 Da        Isoelectric Point: 5.1069

>NTDB_id=137436 APQ97_RS10400 WP_002936549.1 2080635..2080943(-) (comGD/cglD) [Streptococcus suis strain NSUI060]
MLRRKNKAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASFHQKVNLAIGGQEVTNGYQ
AVQVPRNIEVLEGKTITLEEDT

Nucleotide


Download         Length: 309 bp        

>NTDB_id=137436 APQ97_RS10400 WP_002936549.1 2080635..2080943(-) (comGD/cglD) [Streptococcus suis strain NSUI060]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTGACCTTGTTGGTTGTCAGTTTTTTAGCTGTTTC
CTTATCAGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCTAGTTTCCACCAAAAAGTGAACCTTGCTATCGGTGGACAGGAGGTTACAAATGGTTATCAG
GCTGTACAGGTACCCAGAAATATAGAAGTGTTGGAAGGGAAGACCATTACACTTGAAGAAGATACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae Rx1

46.237

91.176

0.422
  comGD/cglD Streptococcus pneumoniae D39

46.237

91.176

0.422
  comGD/cglD Streptococcus pneumoniae R6

46.237

91.176

0.422
  comGD/cglD Streptococcus pneumoniae TIGR4

46.237

91.176

0.422
  comGD/cglD Streptococcus mitis SK321

45.161

91.176

0.412
  comGD/cglD Streptococcus mitis NCTC 12261

45.161

91.176

0.412
  comGD Streptococcus gordonii str. Challis substr. CH1

42.553

92.157

0.392

Multiple sequence alignment