Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   APV63_RS05485 Genome accession   NZ_CP012905
Coordinates   1173322..1174095 (+) Length   257 a.a.
NCBI ID   WP_060473456.1    Uniprot ID   -
Organism   Helicobacter pylori strain 7C     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1168322..1179095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APV63_RS05480 (APV63_05475) hopL 1169619..1173307 (+) 3689 Protein_1073 Hop family outer membrane protein HopL -
  APV63_RS05485 (APV63_05480) proC 1173322..1174095 (+) 774 WP_060473456.1 pyrroline-5-carboxylate reductase Machinery gene
  APV63_RS05490 (APV63_05485) fic 1174123..1174656 (+) 534 WP_000549913.1 protein adenylyltransferase Fic -
  APV63_RS05495 (APV63_05490) ybeY 1174897..1175319 (-) 423 WP_060473457.1 rRNA maturation RNase YbeY -
  APV63_RS05500 (APV63_05495) - 1175373..1175867 (-) 495 WP_000516065.1 flavodoxin -
  APV63_RS05505 (APV63_05500) - 1175959..1176540 (-) 582 WP_001905102.1 DedA family protein -
  APV63_RS05510 (APV63_05505) ccoS 1176664..1176855 (+) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  APV63_RS05515 (APV63_05510) - 1176881..1177855 (+) 975 WP_060473458.1 NAD(P)-binding domain-containing protein -
  APV63_RS05520 (APV63_05515) - 1177862..1179022 (-) 1161 WP_060473459.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28100.66 Da        Isoelectric Point: 6.9448

>NTDB_id=137344 APV63_RS05485 WP_060473456.1 1173322..1174095(+) (proC) [Helicobacter pylori strain 7C]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGKNPEKIAPFLQEKNIQAQIMPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVGFKALSDAIDSLHYLKCMPNIASKFALSSTAVCEKSVAPSISEKALSIIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASSLKDAGIREGLNAKDSLELVEMSFKGFARLLEKERPEVIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACHESVKKMHL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=137344 APV63_RS05485 WP_060473456.1 1173322..1174095(+) (proC) [Helicobacter pylori strain 7C]
ATGGAAATCTTACAATTCATCGGCTATGGGAACATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATCACCGGAAAAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCCCAAATCA
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTACAACCTTAAGGATTTTAAT
TATCAAGGCCAGGCTAAAAGCGTTTTGAGCGCTTTAGCTGGCGTGGGTTTTAAAGCTTTAAGCGATGCGATAGATTCTTT
ACATTACTTAAAATGCATGCCCAATATCGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGCGAAAAATCGGTTGCGC
CTTCAATAAGTGAGAAAGCTTTGAGTATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGTAATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCGCGCTCGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGGGA
GGGCTTGAACGCTAAAGATTCTTTAGAATTGGTGGAAATGAGTTTTAAAGGCTTTGCCAGGCTGTTAGAAAAAGAACGCC
CTGAGGTGATCATAGAGCAAATTTGCACCCCTAAAGGTGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGAGGAGCGTTTATAGAAGCATGCCATGAAAGCGTGAAAAAAATGCACCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366