Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   APV63_RS02110 Genome accession   NZ_CP012905
Coordinates   425819..426994 (-) Length   391 a.a.
NCBI ID   WP_060473014.1    Uniprot ID   -
Organism   Helicobacter pylori strain 7C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 420819..431994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APV63_RS02075 (APV63_02075) - 421150..421464 (+) 315 WP_001265941.1 hypothetical protein -
  APV63_RS02080 (APV63_02080) - 421442..422209 (+) 768 WP_060473010.1 RNA polymerase sigma factor FliA -
  APV63_RS02085 (APV63_02085) fliM 422202..423266 (+) 1065 WP_000763575.1 flagellar motor switch protein FliM -
  APV63_RS02090 (APV63_02090) fliY 423270..424127 (+) 858 WP_060473011.1 flagellar motor switch protein FliY -
  APV63_RS02095 (APV63_02095) - 424156..424692 (+) 537 WP_060473012.1 YhcH/YjgK/YiaL family protein -
  APV63_RS02100 (APV63_02100) - 424689..425186 (+) 498 WP_060473013.1 DUF2147 domain-containing protein -
  APV63_RS02105 (APV63_02105) fur 425207..425659 (-) 453 WP_000824996.1 ferric iron uptake transcriptional regulator -
  APV63_RS02110 (APV63_02110) rarA 425819..426994 (-) 1176 WP_060473014.1 replication-associated recombination protein A Machinery gene
  APV63_RS02115 (APV63_02115) - 426991..427362 (-) 372 WP_000332999.1 heat shock protein transcriptional repressor HspR -
  APV63_RS02120 (APV63_02120) - 427372..428238 (-) 867 WP_060473015.1 DnaJ C-terminal domain-containing protein -
  APV63_RS02125 (APV63_02125) - 428406..429656 (+) 1251 WP_060473016.1 hypothetical protein -
  APV63_RS02130 (APV63_02130) - 429758..430594 (-) 837 WP_080391070.1 5'-3' exonuclease -
  APV63_RS02135 (APV63_02135) - 430849..431745 (-) 897 WP_060473017.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43837.60 Da        Isoelectric Point: 8.6183

>NTDB_id=137332 APV63_RS02110 WP_060473014.1 425819..426994(-) (rarA) [Helicobacter pylori strain 7C]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNHALILGASTKDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAK
ALVLLKKQIESDAKTYLLNNSTGDARALLNLLDLSAKIENPITLKTLKSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=137332 APV63_RS02110 WP_060473014.1 425819..426994(-) (rarA) [Helicobacter pylori strain 7C]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGTGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCTGCATGCTAGAGCGCCCCATTCTTTTGTTTAATGCGACGGATTTTAAGCTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAAATCACGCTTTAATCTTAGGGGCTAGCACGAAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAGGCTTTGCGCTAAA
GCTTTAGTATTGTTAAAAAAACAAATAGAGTCTGACGCTAAAACCTATCTTTTAAACAACAGCACTGGCGACGCTAGAGC
CTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACGCTCAAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCCTCCATTTATTATCTGGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTGCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATTATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTATTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-118)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391