Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   AOT11_RS08640 Genome accession   NZ_CP012881
Coordinates   1851477..1851989 (+) Length   170 a.a.
NCBI ID   WP_017419659.1    Uniprot ID   -
Organism   Vibrio vulnificus NBRC 15645 = ATCC 27562     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1846477..1856989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT11_RS08620 (AOT11_15655) - 1846664..1849177 (-) 2514 WP_017419655.1 penicillin-binding protein 1A -
  AOT11_RS08625 (AOT11_15660) pilM 1849317..1850324 (+) 1008 WP_017419656.1 type IV pilus assembly protein PilM Machinery gene
  AOT11_RS08630 (AOT11_15665) pilN 1850314..1850904 (+) 591 WP_017419657.1 PilN domain-containing protein Machinery gene
  AOT11_RS08635 (AOT11_15670) pilO 1850897..1851487 (+) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  AOT11_RS08640 (AOT11_15675) pilP 1851477..1851989 (+) 513 WP_017419659.1 pilus assembly protein PilP Machinery gene
  AOT11_RS08645 (AOT11_15680) pilQ 1852003..1853787 (+) 1785 WP_017419660.1 type IV pilus secretin PilQ Machinery gene
  AOT11_RS08650 (AOT11_15685) aroK 1854027..1854545 (+) 519 WP_011079357.1 shikimate kinase AroK -
  AOT11_RS08655 (AOT11_15690) aroB 1854578..1855669 (+) 1092 WP_011079358.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19034.13 Da        Isoelectric Point: 10.2810

>NTDB_id=137144 AOT11_RS08640 WP_017419659.1 1851477..1851989(+) (pilP) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
MRSSLSLVAVLILLSGCRANTEPMEGFIRQVESEARQEMAKLQPEREYIPIDYVARENRRPFELPKEAVIASQPVVKKDC
WQPPSRAKNGKLERYPLSQLRLKGVMGSGNTIAGLVQTPQGKVEKVHPGQFIGQNNGKVTVVTPSYILINETLPDGLGCW
QQRKVRLALR

Nucleotide


Download         Length: 513 bp        

>NTDB_id=137144 AOT11_RS08640 WP_017419659.1 1851477..1851989(+) (pilP) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
ATGAGAAGTAGTTTATCGCTCGTCGCTGTGCTGATCTTGCTATCGGGTTGTCGAGCGAATACCGAACCGATGGAAGGTTT
TATCCGCCAAGTTGAATCGGAAGCGCGTCAAGAAATGGCCAAGTTACAACCAGAGCGTGAGTACATCCCGATTGATTACG
TAGCTCGAGAAAATCGCCGTCCTTTTGAGTTACCTAAGGAAGCTGTGATTGCTTCTCAACCTGTCGTTAAGAAAGACTGC
TGGCAGCCACCATCGCGGGCTAAAAATGGCAAGTTGGAGCGCTATCCACTTAGCCAATTACGTCTGAAAGGGGTGATGGG
GAGTGGCAATACCATTGCCGGTCTCGTACAGACCCCTCAAGGCAAAGTGGAGAAAGTACACCCAGGGCAATTTATCGGCC
AGAACAATGGCAAAGTGACCGTAGTAACGCCGTCTTACATATTGATCAATGAAACCCTTCCTGATGGTTTAGGTTGCTGG
CAGCAACGTAAAGTCAGACTGGCATTGAGATAG

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(24-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

64.072

98.235

0.629
  pilP Vibrio cholerae strain A1552

59.375

94.118

0.559