Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RY67_RS02595 Genome accession   NZ_CP010411
Coordinates   630799..632637 (-) Length   612 a.a.
NCBI ID   WP_060620259.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. infantis strain BT1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 625799..637637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RY67_RS12925 - 626088..626465 (+) 378 WP_071477619.1 hypothetical protein -
  RY67_RS02575 (RY67_565) rsmI 626492..627502 (-) 1011 WP_060620256.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RY67_RS02585 (RY67_567) - 628049..629467 (-) 1419 WP_060620257.1 MFS transporter -
  RY67_RS02590 (RY67_568) - 629406..630668 (+) 1263 WP_394334739.1 FAD:protein FMN transferase -
  RY67_RS02595 (RY67_569) rcrQ 630799..632637 (-) 1839 WP_060620259.1 ABC transporter ATP-binding protein Regulator
  RY67_RS02600 (RY67_570) rcrP 632703..634574 (-) 1872 WP_060620260.1 ABC transporter ATP-binding protein Regulator
  RY67_RS02605 (RY67_571) - 634814..635344 (-) 531 WP_060620261.1 MarR family winged helix-turn-helix transcriptional regulator -
  RY67_RS02610 (RY67_572) - 635489..637012 (-) 1524 WP_060620262.1 amino acid permease -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67059.48 Da        Isoelectric Point: 6.5047

>NTDB_id=136953 RY67_RS02595 WP_060620259.1 630799..632637(-) (rcrQ) [Bifidobacterium longum subsp. infantis strain BT1]
MPRGPMGGRRAVEKPHDFGKVMGKLVNYCRNYLPVIIVALILGAIGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMRS
VDFGAVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMVIMKASQKYFARQQTALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFERYNADLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALNGQIEFGVIVAFMMYVRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGTDHAGGRDVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTRSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=136953 RY67_RS02595 WP_060620259.1 630799..632637(-) (rcrQ) [Bifidobacterium longum subsp. infantis strain BT1]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAAAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCGTCGCACTCATCCTGGGCGCGATCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAGGGCCTGCCCGCCATCGTCAACGGCAGACCGGTGATGCGCTCG
GTCGATTTCGGCGCGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGGCTGCGCGAATCGATCTCGGTCAAAATCAACCGGTTGC
CGCTCAAATACTTCGACAAGGTCAGCTACGGCGACGTGCTGTCGCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATCACCTCGGCGACGTTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGTCATCATGAAGGCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGACGGCTCTGGGCGACGTCAACGGCCACGTCGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCGTACAACGGCGAGGCGGATTCCATCCGCCGCTTCGAACGGTACAACGCGGACCTCTACGAGTCGGGTTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCACTCAACGGCCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAAGCCTTCCAGAACCTGCAGCGTTGCGCGGCGGCCGCCGAACGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGCAGGCCCTGCTCGGCACGGACCATGCGGGCGGGCGCGACGTGAAGGGCGATGTGG
AATTCAGCCACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAG
AAGGTCGCCATCGTCGGCCCGACCGGCGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTACGAGATTTCCGG
CGGCTCGATTTCGATCGACGGCGTGGACACCAGGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGC
AGGATACGTGGGTGTTCCGCGGAACCGTGCGCGAGAACATCGCCTACTCCAAGCCCGGCGTGACCGACAAGCAGATCGAG
GATGCGTGCAAGGCCGTGGGTCTTGACCACTTCATCCGTTCGTTGCCGGACGGCTACGACACCGTGCTCGATGACAAGTC
GTCGTTGTCCCAGGGGCAGAAGCAGCTGCTCACCATCGCCCGCGCGATGGTGCAGGATGCGCCGATCCTGATTCTCGACG
AGGCCACCTCCTCGGTCGATACCCGTACTGAAGAGCTGATCCAGAAGGCCATGGATGCGCTGACCGTGGGGCGCACGAGC
TTTGTGATCGCGCATCGCCTCTCCACGATTCGTGACGCCGACATGATTCTCGTCATGAACCACGGCGACGTGATCGAGCG
CGGCACGCACGACGAACTGCTGGCGGCGGGCGGTTTTTACGCCGATCTGTACAACAGCCAGTTCGCACTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.592

96.078

0.525

Multiple sequence alignment