Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SB24_RS01705 Genome accession   NZ_CP010406
Coordinates   451367..452146 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus sp. Pc3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 446367..457146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB24_RS01675 (SB24_01675) fliH 446411..447166 (-) 756 WP_015417466.1 flagellar assembly protein FliH -
  SB24_RS01680 (SB24_01680) fliG 447159..448175 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  SB24_RS01685 (SB24_01685) fliF 448188..449798 (-) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  SB24_RS01690 (SB24_01690) fliE 449841..450161 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  SB24_RS01695 (SB24_01695) flgC 450172..450624 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  SB24_RS01700 (SB24_01700) flgB 450624..451013 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  SB24_RS01705 (SB24_01705) codY 451367..452146 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SB24_RS01710 (SB24_01710) hslU 452184..453587 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  SB24_RS01715 (SB24_01715) hslV 453604..454149 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  SB24_RS01720 (SB24_01720) xerC 454165..455082 (-) 918 WP_039251511.1 tyrosine recombinase XerC -
  SB24_RS01725 (SB24_01725) trmFO 455152..456459 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=136854 SB24_RS01705 WP_003154263.1 451367..452146(-) (codY) [Bacillus sp. Pc3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=136854 SB24_RS01705 WP_003154263.1 451367..452146(-) (codY) [Bacillus sp. Pc3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment