Detailed information NTG0136750

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AO356_RS15955
• Genome accession: NZ_CP012831
• Coordinates: 3607377..3609941 (+)
• Length: 854 a.a.
• NCBI ID: WP_053125348.1
• Uniprot ID: A0A6N1CIJ1
• Organism: Pseudomonas fluorescens strain FW300-N2C3
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 3602377..3614941

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AO356_RS15930 (AO356_15910)	pilS	3602458..3604047 (-)	1590	WP_060740569.1	ATP-binding protein	Regulator
AO356_RS15935 (AO356_15915)	-	3604037..3604270 (-)	234	WP_060740570.1	PP0621 family protein	-
AO356_RS15940 (AO356_15920)	-	3604396..3605412 (-)	1017	WP_046065043.1	outer membrane protein assembly factor BamD	-
AO356_RS15945 (AO356_15925)	rluD	3605563..3606525 (+)	963	WP_060740571.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
AO356_RS15950 (AO356_15930)	pgeF	3606522..3607247 (+)	726	WP_060740572.1	peptidoglycan editing factor PgeF	-
AO356_RS15955 (AO356_15935)	clpC	3607377..3609941 (+)	2565	WP_053125348.1	ATP-dependent chaperone ClpB	Regulator
AO356_RS33385	-	3610798..3611520 (+)	723	Protein_3209	MCP four helix bundle domain-containing protein	-
AO356_RS33390	-	3611824..3612423 (+)	600	Protein_3210	methyl-accepting chemotaxis protein	-
AO356_RS15985 (AO356_15965)	-	3612576..3613874 (-)	1299	WP_060740574.1	NAD(P)/FAD-dependent oxidoreductase	-
AO356_RS15990 (AO356_15970)	-	3613935..3614108 (-)	174	WP_039593877.1	DUF3094 family protein	-
AO356_RS15995 (AO356_15975)	-	3614161..3614688 (-)	528	WP_060740575.1	MOSC domain-containing protein	-

Sequence

Protein

• Length: 854 a.a.
• Molecular weight: 95508.06 Da
• Isoelectric Point: 5.2138

>NTDB_id=136750 AO356_RS15955 WP_053125348.1 3607377..3609941(+) (clpC) [Pseudomonas fluorescens strain FW300-N2C3]
MRIDRLTSKLQLALSDAQSLAVGLDHPGIEPAHLMQAMLEQQGGSIKPLLMQVGFDVNSLRKELAKELDQLPKIQNPTGD
VNMSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDENSKLGKLLLGQGVSKKALENAINNLRGGEAVNDANHEESRQA
LDKYTVDLTKRAEEGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGEVPDGLKGKRLLSL
DMGALIAGAKYRGEFEERLKALLNELSKQEGQIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYR
QYIEKDAALERRFQKVLVEEPSEEDTIAILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASR
IRMEIDSKPEVLDRLERRLIQLKVESQALKKESDEAAKKRLERLQEEIVRHEREYSDLEEIWNSEKAEVQGSAQIQQKIE
QSRQELEAARRKGDLNRMAELQYGVIPDLERSLQMVDQHGKSENQLLRSKVTEEEIAEVVSKWTGIPVSKMLEGERDKLL
KMESLLHQRVIGQEEAVVAVSNAVRRSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEK
HSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLEDGRLTDSHGRTVDFRNTVIVMTSNL
GSTQIQELVGDREAQRAAVMDAISTHFRPEFINRVDEVVIFEPLARDQIAGITEIQLGRLRSRLTERELKLQLSDEALDK
LIAVGYDPVYGARPLKRAIQRWIENPLAQLILSGRFMPGETVTGTVENDEIVFN

Nucleotide

• Length: 2565 bp

>NTDB_id=136750 AO356_RS15955 WP_053125348.1 3607377..3609941(+) (clpC) [Pseudomonas fluorescens strain FW300-N2C3]
ATGCGTATTGATCGTTTAACCAGCAAATTACAATTGGCCCTGTCCGATGCCCAGTCCCTGGCCGTCGGCCTGGACCACCC
CGGTATCGAACCGGCGCATTTGATGCAGGCCATGCTTGAACAGCAGGGCGGCTCCATCAAGCCCCTGTTGATGCAGGTCG
GCTTTGACGTCAACAGCCTGCGCAAAGAACTGGCCAAGGAGCTCGACCAGTTACCCAAGATCCAGAATCCGACCGGTGAC
GTGAACATGTCCCAGGATCTGGCGCGACTGCTCAACCAGGCCGACCGCTTGGCCCAGCAGAAGGGCGACCAGTTCATTTC
CAGCGAATTGGTGCTGCTCGCCGCCATGGACGAGAACAGCAAGCTCGGCAAGCTGCTGCTCGGCCAAGGGGTGAGCAAGA
AAGCCCTGGAAAATGCCATCAACAACCTGCGTGGCGGCGAAGCGGTCAACGACGCCAATCACGAGGAGTCACGCCAGGCG
CTGGACAAATACACCGTCGACCTGACCAAGCGCGCCGAGGAAGGCAAGCTCGACCCGGTGATCGGTCGTGACGATGAAAT
CCGCCGCACGATCCAGGTGCTGCAACGCCGCACCAAGAACAACCCGGTGCTGATCGGTGAGCCAGGCGTGGGTAAAACCG
CCATCGCCGAGGGCCTGGCCCAGCGCATTATCAACGGCGAAGTGCCGGACGGCCTCAAGGGCAAGCGCCTGTTGTCCCTG
GACATGGGGGCCTTGATCGCCGGTGCCAAGTACCGTGGCGAGTTCGAAGAACGGCTCAAGGCTTTGCTCAATGAACTGTC
CAAGCAGGAAGGGCAGATCATCCTGTTCATCGACGAACTGCACACCATGGTCGGTGCGGGCAAGGGCGAGGGTTCGATGG
ACGCCGGCAACATGCTCAAGCCTGCGTTGGCCCGGGGCGAGTTGCACTGCGTCGGCGCGACCACGCTCAACGAGTACCGC
CAATATATAGAGAAGGATGCGGCGCTGGAGCGGCGCTTCCAGAAAGTGCTGGTGGAGGAACCGAGCGAAGAAGACACCAT
CGCCATCCTGCGCGGCCTTAAAGAACGCTATGAAGTTCACCACAAGGTGGCGATCACCGACGGCGCGATCATCGCCGCGG
CCAAGCTCAGCCACCGCTACATCACCGACCGTCAATTGCCGGACAAGGCCATCGACCTGATCGACGAGGCGGCCAGCCGC
ATCCGCATGGAGATCGACTCCAAGCCGGAAGTGCTGGATCGCCTGGAGCGGCGCCTGATCCAGCTCAAGGTCGAGTCCCA
GGCACTGAAGAAAGAAAGCGACGAAGCGGCGAAGAAGCGTCTGGAAAGGTTGCAGGAAGAAATCGTTCGTCACGAACGCG
AGTATTCCGACCTCGAGGAAATCTGGAACTCGGAGAAAGCCGAGGTCCAGGGCTCGGCGCAGATCCAGCAAAAGATCGAA
CAGTCCCGCCAGGAACTGGAAGCGGCTCGCCGCAAAGGCGACCTCAACCGCATGGCCGAGCTGCAGTACGGGGTGATCCC
GGACCTGGAGCGCAGCCTGCAGATGGTCGACCAGCACGGCAAGAGCGAAAACCAGTTGCTGCGCAGCAAGGTCACCGAGG
AAGAAATCGCCGAGGTGGTGTCCAAGTGGACCGGCATTCCGGTCTCGAAAATGCTCGAGGGCGAGCGCGACAAGCTGCTG
AAGATGGAAAGCCTGCTGCACCAGCGCGTGATTGGCCAGGAAGAAGCGGTAGTGGCGGTCTCCAACGCTGTGCGCCGGTC
CCGCGCCGGGTTGTCGGACCCTAATCGTCCAAGTGGCTCGTTCATGTTCCTCGGCCCGACCGGCGTCGGTAAAACCGAGC
TGTGCAAGGCGCTGGCCGAGTTCCTCTTCGACACCGAAGAGGCCATGGTGCGCATCGACATGTCCGAGTTCATGGAGAAG
CATTCCGTGGCACGGCTGATCGGTGCGCCACCGGGTTATGTCGGCTATGAAGAGGGTGGTTACCTGACCGAGGCTGTGCG
TCGCAAGCCGTACTCGGTGATCCTGCTCGATGAGGTCGAGAAGGCGCACCCGGATGTGTTCAATATCCTGCTGCAAGTGC
TGGAGGATGGTCGCCTGACCGACAGCCACGGACGTACGGTGGACTTCCGCAACACGGTGATCGTGATGACCTCCAACCTG
GGCTCGACACAGATCCAGGAGTTGGTGGGCGACCGTGAGGCGCAGCGCGCAGCGGTGATGGATGCGATCTCTACCCACTT
CCGCCCGGAATTCATCAACCGGGTCGACGAGGTGGTGATCTTCGAGCCGTTGGCCCGGGATCAGATTGCCGGTATTACCG
AGATCCAGTTGGGTCGCCTGCGCAGCCGTCTCACCGAGCGCGAGCTCAAGCTGCAATTGAGCGACGAGGCCTTGGACAAG
TTGATTGCGGTGGGTTACGACCCGGTCTATGGCGCGCGGCCGCTCAAACGAGCGATCCAGCGCTGGATCGAAAACCCGCT
GGCGCAGTTGATTCTGTCCGGTCGCTTCATGCCGGGCGAAACCGTGACCGGTACGGTGGAGAACGACGAAATCGTCTTCA
ACTGA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (342-444)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (764-843)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-758)

• ATPase family associated with various cellular activities (AAA) (AAA) (203-335)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

3D structure

• AlphaFold DB: A0A6N1CIJ1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.677	100	0.437