Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SanJ4211_RS07705 Genome accession   NZ_CP012805
Coordinates   1520656..1521444 (-) Length   262 a.a.
NCBI ID   WP_003026125.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4211     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1515656..1526444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS07685 (SanJ4211_1519c) gatA 1515990..1517456 (-) 1467 WP_021002003.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  SanJ4211_RS07690 (SanJ4211_1520c) gatC 1517456..1517758 (-) 303 WP_003026120.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SanJ4211_RS07695 (SanJ4211_1521c) aspS 1517835..1519574 (-) 1740 WP_021002004.1 aspartate--tRNA ligase -
  SanJ4211_RS07700 (SanJ4211_1522c) - 1520081..1520656 (-) 576 WP_057489801.1 cysteine hydrolase family protein -
  SanJ4211_RS07705 (SanJ4211_1523c) codY 1520656..1521444 (-) 789 WP_003026125.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SanJ4211_RS07710 (SanJ4211_1524c) - 1521609..1522823 (-) 1215 WP_021002006.1 pyridoxal phosphate-dependent aminotransferase -
  SanJ4211_RS07715 (SanJ4211_1525) - 1522975..1523427 (+) 453 WP_020999785.1 universal stress protein -
  SanJ4211_RS07720 (SanJ4211_1526c) - 1523473..1524861 (-) 1389 WP_021002007.1 Cof-type HAD-IIB family hydrolase -
  SanJ4211_RS07725 (SanJ4211_1527) - 1524926..1525888 (+) 963 WP_021002008.1 asparaginase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29737.06 Da        Isoelectric Point: 5.0797

>NTDB_id=136549 SanJ4211_RS07705 WP_003026125.1 1520656..1521444(-) (codY) [Streptococcus anginosus strain J4211]
MANLLAKTRKITSILRRSDERLQDELPYNAITQQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKIFPEEYV
RTANLMYDTEANLPINHDLSIFPVETKDEFPDGLTTISPIHVSGIRLGTLIVWRNDKEFDDDDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=136549 SanJ4211_RS07705 WP_003026125.1 1520656..1521444(-) (codY) [Streptococcus anginosus strain J4211]
ATGGCAAACTTATTAGCAAAAACACGAAAAATTACATCTATTTTGCGTCGTTCAGATGAGCGATTACAGGATGAATTACC
TTACAATGCAATTACCCAGCAGTTAGCTGAAATTATGGATTGCAATGCCTGCATTGTAAACAGTAAAGGGCGTCTTTTGG
GGTATTTCATGCGCTACAAGACGAACAATGACCGTGTGGAAGCATTTTATCAAACGAAAATCTTCCCAGAAGAATATGTT
CGCACAGCGAATTTAATGTATGACACAGAAGCCAATCTTCCTATCAATCATGATTTGTCAATTTTTCCAGTCGAAACCAA
AGATGAATTTCCAGATGGCTTGACGACAATTTCACCTATCCATGTTTCAGGGATTCGCTTAGGAACTTTGATTGTTTGGC
GCAATGATAAAGAATTTGATGATGATGATTTGATTTTGGTTGAAATTGCAAGTACAGTGGTTGGTATTCAGTTGCTCAAC
TTCCAACGAGAAGAAGATGAAAAAAATATTCGTCGCAGAACAGCTGTAACCATGGCTGTAAATACTTTGTCTTATTCAGA
ATTACGAGCTGTTTCAGCTATTTTAGGTGAATTAAACGGTAATGAAGGTCAATTGACAGCATCGGTCATTGCGGATCGTA
TTGGTATTACTCGCTCGGTGATTGTCAATGCTCTGCGTAAACTAGAGAGTGCAGGCATTATTGAAAGTCGTTCTTTGGGA
ATGAAAGGAACCTATCTTAAAGTCCTTATTCCCGATGTCTTTGAAGAGATTAAAAAGAGAGATTACTGA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

61.45

100

0.615
  codY Bacillus subtilis subsp. subtilis str. 168

50.813

93.893

0.477

Multiple sequence alignment