Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   EHS42_RS02270 Genome accession   NZ_CP010350
Coordinates   452593..453450 (+) Length   285 a.a.
NCBI ID   WP_010327571.1    Uniprot ID   A0AA42M8G5
Organism   Acinetobacter johnsonii XBB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447593..458450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHS42_RS02245 (RZ95_02240) - 448204..448578 (-) 375 WP_029575121.1 hypothetical protein -
  EHS42_RS02250 (RZ95_02245) - 448791..449843 (-) 1053 WP_228140122.1 sensor domain-containing diguanylate cyclase -
  EHS42_RS02255 (RZ95_02250) - 450123..450698 (-) 576 WP_010327573.1 xanthine phosphoribosyltransferase -
  EHS42_RS02260 (RZ95_02255) - 450789..451499 (-) 711 WP_010327572.1 DUF3108 domain-containing protein -
  EHS42_RS02265 (RZ95_02260) - 451655..452332 (-) 678 WP_004977854.1 hypothetical protein -
  EHS42_RS02270 (RZ95_02265) tonB2 452593..453450 (+) 858 WP_010327571.1 energy transducer TonB Machinery gene
  EHS42_RS02275 (RZ95_02270) - 453496..453906 (-) 411 WP_010327570.1 hypothetical protein -
  EHS42_RS02280 (RZ95_02275) ybeY 454007..454486 (-) 480 WP_010327569.1 rRNA maturation RNase YbeY -
  EHS42_RS02285 (RZ95_02280) - 454544..455620 (-) 1077 WP_004977846.1 PhoH family protein -
  EHS42_RS02290 (RZ95_02285) miaB 455659..457116 (-) 1458 WP_010327568.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32557.05 Da        Isoelectric Point: 6.0664

>NTDB_id=136549 EHS42_RS02270 WP_010327571.1 452593..453450(+) (tonB2) [Acinetobacter johnsonii XBB1]
MPLAHDWWKDPIFTATVVLAVFLHLVILTLQFAMPQENDAAVKEIAVTLRPSDKKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEEQPETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDTKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=136549 EHS42_RS02270 WP_010327571.1 452593..453450(+) (tonB2) [Acinetobacter johnsonii XBB1]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACCGTCGTGCTGGCGGTATTTTTGCATCTCGTAAT
TTTGACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCGGTGACTTTGCGTCCTTCAGATA
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAGGGTTCAGGGACTTTTCGTGAGTCACATCGCATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAAGAGCAGCCTGAAACTTTAGAACAGATCCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAACTGTTGATGACGACTTTGAGTTGGCAAAAACAAGCTGAGGATAACCAGCGCAAAAAAG
CCATGGAAGAGATGAACAGCCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTGCAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCCAAGCAAGATGTTTCGGCAGCCTATCTTGA
AAAGTTCCGTCAGAAAGTGGAGTTTTATGGCAACCGTTACTACCCAGAAGCAGCTAAACAGCAGCGGCTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGCATCAGGAGGTATCCGTGCCATTCGCCTGATTGATAGTTCAGGCCATGAGATGCTC
GATGAGGCTGCAAAAGCCTCGGTGCGTAAGGCTGCACCATTCGGTGGATTTGATACCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGACCCAGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.929

98.246

0.726

Multiple sequence alignment