Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SanJ4211_RS01540 Genome accession   NZ_CP012805
Coordinates   283186..284457 (-) Length   423 a.a.
NCBI ID   WP_021001255.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 278186..289457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS01515 (SanJ4211_0275) - 279591..280358 (+) 768 WP_021001251.1 epoxyqueuosine reductase QueH -
  SanJ4211_RS01520 (SanJ4211_0276) - 280545..281183 (+) 639 WP_021001252.1 deoxynucleoside kinase -
  SanJ4211_RS01525 (SanJ4211_0277) - 281248..281907 (+) 660 WP_021001253.1 HD domain-containing protein -
  SanJ4211_RS01530 (SanJ4211_0278c) - 281978..282493 (-) 516 WP_021001254.1 DUF308 domain-containing protein -
  SanJ4211_RS01540 (SanJ4211_0280c) rarA 283186..284457 (-) 1272 WP_021001255.1 replication-associated recombination protein A Machinery gene
  SanJ4211_RS01545 (SanJ4211_0281) - 284559..285029 (+) 471 WP_021001256.1 DUF3013 family protein -
  SanJ4211_RS01550 (SanJ4211_0282) - 285079..285522 (+) 444 WP_021001257.1 NUDIX hydrolase -
  SanJ4211_RS01555 (SanJ4211_0283) - 285519..285998 (+) 480 WP_021001258.1 GNAT family N-acetyltransferase -
  SanJ4211_RS01560 (SanJ4211_0284) prmA 286002..286955 (+) 954 WP_021001259.1 50S ribosomal protein L11 methyltransferase -
  SanJ4211_RS01565 (SanJ4211_0285) - 286956..287696 (+) 741 WP_021001260.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SanJ4211_RS10085 (SanJ4211_0286) - 287863..288009 (+) 147 WP_003028899.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46877.33 Da        Isoelectric Point: 6.1929

>NTDB_id=136486 SanJ4211_RS01540 WP_021001255.1 283186..284457(-) (rarA) [Streptococcus anginosus strain J4211]
MPDNLAIRMRPKNINQVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLEKTKQDFLLPLLENGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLTNDDIKQAIQ
TALTDTERGFDFPVQLDDDALDFITTSTNGDLRSAFNSLDLAVLSTKEDTEGVRHITLDIMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANIV
IDLALSPKSNSAIVAIDKALSDLRQNGNLPIPRHLRDGHYAGSKELGNAQDYKYPHNYPGNWVQQDYLPEKIKNADYFTP
NENGKYERALGMTKNKIEQLKNH

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=136486 SanJ4211_RS01540 WP_021001255.1 283186..284457(-) (rarA) [Streptococcus anginosus strain J4211]
ATGCCAGACAATTTAGCGATTCGTATGCGGCCTAAAAATATCAATCAGGTCATCGGTCAGAAACATCTGGTTGGCGAAGG
AAAAATCATTCGTCGCATGGTGGAAGCCAATCGCCTGTCTTCCATGATTCTCTACGGTCCACCAGGGATTGGCAAGACTT
CCATTGCTTCAGCCATCGCTGGTACTACAAAATTTGCTTTTCGGACCTTTAATGCCACCGTTGATAGTAAGAAGCGCCTG
CAAGAGATTGCGGAAGAAGCAAAATTCTCTGGTGGTTTAGTGCTGCTGTTAGATGAGATTCACCGCTTGGAAAAGACCAA
GCAGGACTTCCTCCTCCCTCTTTTAGAAAACGGTCTGGTCATCATGATTGGCGCCACAACAGAAAATCCCTTTTTCTCTG
TCACTCCCGCTATTCGCAGCCGGGTACAGATTTTCGAGCTGGAACCTCTGACAAATGATGATATTAAACAAGCCATTCAA
ACAGCCCTGACGGACACCGAACGAGGTTTTGATTTTCCTGTCCAGCTAGATGATGACGCTCTGGATTTCATTACCACTTC
CACCAACGGTGACCTGCGCTCAGCCTTTAATTCTCTAGATTTAGCAGTTCTCTCTACCAAAGAGGATACTGAAGGGGTTC
GCCATATCACTCTCGATATTATGGAAAACAGCCTGCAAAAGAGCTACATCACTATGGACAAAGACGGAGACGGTCATTAT
GACGTCCTGTCCGCCTTACAGAAGTCCATCCGCGGGTCTGATGTCAATGCCAGTCTCCATTATGCAGCTCGCTTGATTGA
AGCTGGAGACCTTCCCAGCCTCGCACGACGCCTGACGGTCATTGCTTATGAAGACATTGGTTTGGCAAATCCCGATGCTC
AGATTCATACAGTGACCGCACTTGAAGCCGCTCAAAAAATTGGGTTCCCAGAAGCTCGCATCCTCATTGCCAACATTGTC
ATTGACCTAGCACTTTCTCCTAAGTCCAACTCTGCCATAGTAGCTATAGATAAAGCTCTTTCTGATTTGCGACAAAATGG
AAACTTACCTATCCCCCGCCATCTACGAGACGGTCACTACGCTGGTAGCAAGGAGCTGGGAAATGCGCAAGATTACAAAT
ATCCACATAACTATCCTGGTAATTGGGTGCAGCAAGACTACCTTCCTGAAAAAATTAAAAATGCCGATTATTTCACTCCG
AACGAAAACGGGAAGTACGAACGAGCCCTTGGCATGACTAAAAATAAGATTGAACAACTCAAAAACCACTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.287

98.818

0.596