Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACH32_RS13235 Genome accession   NZ_CP012756
Coordinates   2623763..2624536 (+) Length   257 a.a.
NCBI ID   WP_000055334.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JS395     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2618763..2629536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH32_RS13215 (ACH32_13205) trmFO 2619106..2620413 (+) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACH32_RS13220 (ACH32_13210) xerC 2620831..2621727 (+) 897 WP_001015604.1 tyrosine recombinase XerC -
  ACH32_RS13225 (ACH32_13215) hslV 2621724..2622269 (+) 546 WP_060649861.1 ATP-dependent protease subunit HslV -
  ACH32_RS13230 (ACH32_13220) hslU 2622335..2623738 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ACH32_RS13235 (ACH32_13225) codY 2623763..2624536 (+) 774 WP_000055334.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACH32_RS13240 (ACH32_13230) - 2624587..2624679 (+) 93 WP_031785459.1 hypothetical protein -
  ACH32_RS13245 (ACH32_13235) rpsB 2624878..2625645 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACH32_RS13250 (ACH32_13240) - 2625679..2625792 (+) 114 WP_001789890.1 hypothetical protein -
  ACH32_RS13255 (ACH32_13245) tsf 2625827..2626708 (+) 882 WP_000201387.1 translation elongation factor Ts -
  ACH32_RS13260 (ACH32_13250) pyrH 2626845..2627567 (+) 723 WP_000057330.1 UMP kinase -
  ACH32_RS13265 (ACH32_13255) frr 2627586..2628140 (+) 555 WP_001280003.1 ribosome recycling factor -
  ACH32_RS13270 (ACH32_13260) - 2628512..2629282 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28727.12 Da        Isoelectric Point: 6.0680

>NTDB_id=136376 ACH32_RS13235 WP_000055334.1 2623763..2624536(+) (codY) [Staphylococcus aureus strain JS395]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENKELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=136376 ACH32_RS13235 WP_000055334.1 2623763..2624536(+) (codY) [Staphylococcus aureus strain JS395]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAATAAAGAGTTGTTTAT
TGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTATTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGC
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment