Detailed information NTG0136271

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: RP72_RS08820
• Genome accession: NZ_CP010314
• Coordinates: 1669611..1670390 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1664611..1675390

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RP72_RS08800 (RP72_08800)	trmFO	1665304..1666611 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
RP72_RS08805 (RP72_08805)	xerC	1666679..1667593 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
RP72_RS08810 (RP72_08810)	clpQ	1667606..1668151 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
RP72_RS08815 (RP72_08815)	hslU	1668168..1669571 (+)	1404	WP_003245556.1	HslU--HslV peptidase ATPase subunit	-
RP72_RS08820 (RP72_08820)	codY	1669611..1670390 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
RP72_RS08825 (RP72_08825)	flgB	1670770..1671159 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
RP72_RS08830 (RP72_08830)	flgC	1671159..1671611 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
RP72_RS08835 (RP72_08835)	fliE	1671622..1671942 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
RP72_RS08840 (RP72_08840)	fliF	1671988..1673598 (+)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
RP72_RS08845 (RP72_08845)	fliG	1673611..1674627 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
RP72_RS08850 (RP72_08850)	fliH	1674620..1675372 (+)	753	WP_003244804.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=136271 RP72_RS08820 WP_003220850.1 1669611..1670390(+) (codY) [Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=136271 RP72_RS08820 WP_003220850.1 1669611..1670390(+) (codY) [Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467