Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   PJ18_RS07485 Genome accession   NZ_CP010307
Coordinates   1440289..1440897 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni subsp. jejuni strain 00-6200     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1435289..1445897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ18_RS07460 (PJ18_07460) - 1435446..1436210 (+) 765 WP_002894096.1 TIGR02757 family protein -
  PJ18_RS07465 (PJ18_07465) - 1436214..1436978 (+) 765 WP_002855821.1 TSUP family transporter -
  PJ18_RS07470 (PJ18_07470) ctsF 1436971..1438152 (-) 1182 WP_002894094.1 type II secretion system F family protein Machinery gene
  PJ18_RS07475 (PJ18_07475) ctsE 1438149..1439708 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  PJ18_RS07480 (PJ18_07480) ctsX 1439698..1440285 (-) 588 WP_002851370.1 membrane protein Machinery gene
  PJ18_RS07485 (PJ18_07485) ctsP 1440289..1440897 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  PJ18_RS07490 (PJ18_07490) ctsD 1440890..1442302 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  PJ18_RS07495 (PJ18_07495) ctsR 1442280..1442591 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=136189 PJ18_RS07485 WP_002851464.1 1440289..1440897(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain 00-6200]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=136189 PJ18_RS07485 WP_002851464.1 1440289..1440897(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain 00-6200]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment