Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SanJ4206_RS08485 Genome accession   NZ_CP012719
Coordinates   1748662..1751016 (+) Length   784 a.a.
NCBI ID   WP_022525468.1    Uniprot ID   A0ABD7NGS8
Organism   Streptococcus anginosus strain J4206     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1743662..1756016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4206_RS08460 (SanJ4206_1647c) - 1745835..1746383 (-) 549 WP_003039514.1 CvpA family protein -
  SanJ4206_RS08465 (SanJ4206_1648c) - 1746380..1746685 (-) 306 WP_004224416.1 hypothetical protein -
  SanJ4206_RS08470 (SanJ4206_1649) rnhC 1746771..1747661 (+) 891 WP_004224413.1 ribonuclease HIII -
  SanJ4206_RS08475 (SanJ4206_1650) lepB 1747665..1748279 (+) 615 WP_003028620.1 signal peptidase I -
  SanJ4206_RS08485 (SanJ4206_1652) recD/recD2/recDB 1748662..1751016 (+) 2355 WP_022525468.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SanJ4206_RS08490 (SanJ4206_1653c) - 1751061..1752317 (-) 1257 WP_157622113.1 ISL3 family transposase -
  SanJ4206_RS08495 (SanJ4206_1655) - 1752631..1753822 (+) 1192 Protein_1635 IS110 family transposase -
  SanJ4206_RS08500 (SanJ4206_1656c) - 1754145..1754834 (-) 690 WP_003028628.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88412.60 Da        Isoelectric Point: 4.6729

>NTDB_id=136102 SanJ4206_RS08485 WP_022525468.1 1748662..1751016(+) (recD/recD2/recDB) [Streptococcus anginosus strain J4206]
MEFYFSGTIERIIFENPSSFFRILLLDIDDTDADFDDFEIIVTGTMADIMEGEDYTFWGNLVQHPKYGEQLKITRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNTIDKVLAEPEKLKDIAGLSAKNREAFLTKLRQNYGTERILAKLSEYG
IPNKLAFQVQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIEGTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELDPSSVADELAHLIEEDKVQNIDTKIFENSLFFAEEGIRSNLLRILEKGKQNKFEPKKIEAAI
AQIENEFAISYDVTQKQAICDAINHKIFILTGGPGTGKTTVINGIIAVYALLNGLDLRKSQDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNTKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQSKDSTIVTLASQIQKGILPPDFIEKKADRSYFEARNEHIPQMIERIVEAALRSGIPAQDVQVL
APMYRGQAGIDHINQLMQNLINPVETEQIIFEATDCQYRQGDKVIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEVIYPRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFDFAVKN
TGTARNTYLIQRFSDLLTDEKVIHTSVNNLETTVEKYILTEENFLKINPMIGITDEDIQNVFGE

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=136102 SanJ4206_RS08485 WP_022525468.1 1748662..1751016(+) (recD/recD2/recDB) [Streptococcus anginosus strain J4206]
ATGGAATTTTACTTTTCAGGCACTATTGAACGCATTATTTTTGAAAATCCCAGCAGTTTCTTTCGGATTCTGCTGTTAGA
TATTGACGACACCGATGCAGATTTTGATGATTTTGAGATTATTGTCACAGGCACCATGGCGGATATTATGGAGGGCGAAG
ACTATACTTTTTGGGGAAACCTCGTGCAACACCCTAAATATGGGGAACAGCTCAAAATAACACGCTATGAGCGGGCAAAG
CCAACCAGCAAAGGCTTAGTCAAATATTTTTCAAGCGACCATTTTAAAGGGATTGGTGTAAAAACAGCGCAAAAAATCGT
GGATCTCTATGGCGATAACACGATTGACAAAGTTTTAGCAGAGCCAGAAAAATTAAAGGATATTGCAGGTCTTTCTGCCA
AAAATCGCGAAGCCTTTCTCACGAAACTAAGACAAAATTACGGTACCGAGAGAATCCTTGCCAAGCTATCTGAATACGGT
ATCCCCAACAAACTAGCTTTTCAAGTGCAAGATTTCTACAAGGAAGAAACCTTAGAAATCGTGGAACACTATCCTTACCA
ATTGGTAGAAGACATTCAAGGAATTGGTTTTAAAATTGCCGACCAACTGGCACAAAGCTTAGGGATTGAAGGTACCGCTC
CAGAGCGTTTTCGTGCTGGGTTGCTTCACACGCTCCTCACTCAATCTATGGAAAAAGGCGACACCTATCTTGAAGCAAAA
GAACTTCTGGAACATACGATTGAACTCCTCGAAAGTTCCCGTCAGATTGAGTTAGACCCAAGTTCTGTTGCGGATGAGCT
GGCACATTTGATTGAAGAAGATAAAGTTCAAAATATTGATACAAAGATTTTTGAAAACAGTCTCTTTTTTGCCGAAGAAG
GGATTCGTAGCAATCTCTTGCGCATTTTAGAAAAAGGGAAGCAAAACAAGTTTGAACCGAAAAAGATCGAAGCTGCTATT
GCTCAAATCGAAAATGAGTTTGCCATTTCCTATGATGTGACTCAAAAACAAGCAATTTGTGACGCTATCAATCACAAAAT
TTTTATCCTAACGGGTGGCCCTGGAACAGGAAAAACGACCGTCATCAATGGAATCATTGCTGTTTATGCTCTGCTGAATG
GGTTGGATTTGCGCAAATCTCAGGATTTGCCTATCCTGCTAGCAGCTCCTACTGGGCGTGCTGCCAGACGCATGAATGAA
TTAACAGGGCTTCCAAGCGCTACAATTCATCGGCATTTAGGCATGACAGGAGACGACGACACCAGCCATTTAGACGATTA
TTTGGACGCAGACTTTATTATTGTGGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTCCTCAGCAACATTT
CATCAAACACCAAACTCCTAATCGTCGGAGATGCCGACCAACTACCCTCTGTCAGTCCTGGACAAGTGTTAGCAGATTTG
CTGAAAATCCCTCTTCTTCCGCAGACCAAATTAGAAAAAATTTATCGACAAAGCAAAGACTCTACTATCGTCACCTTAGC
CAGTCAGATTCAAAAAGGCATTCTGCCACCTGATTTTATAGAAAAAAAAGCTGACCGTTCTTATTTTGAAGCGCGCAACG
AGCATATTCCACAGATGATCGAGCGCATCGTAGAGGCTGCTCTCCGCAGCGGCATTCCAGCTCAAGATGTGCAGGTGCTT
GCGCCTATGTACCGCGGACAGGCTGGGATTGACCACATCAATCAACTCATGCAAAATCTAATCAATCCTGTCGAAACAGA
ACAAATCATTTTTGAAGCAACTGATTGTCAATATCGACAAGGCGACAAGGTGATTCATCTGGTCAATGATGCGGAAAGCA
ATGTCTTTAACGGCGATTTGGGTTATATCACTGATTTGCTGCCAGCAAAATATACGGACTCTAAACAGGACGAGCTGACT
ATCAACTTTGATGGCAATGAAGTCATTTACCCACGCAGCGAATGGTATAAAATTCGTCTGGCATACGCTATGAGTATCCA
CAAATCTCAGGGTAGTGAATTTCCTGTAGTCATTTTACCGATTACATCCAGCAGCCACCGTATGCTGCAACGCAATCTTA
TCTATACTGCTATCACCCGTGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCCTTTGACTTTGCTGTCAAAAAC
ACTGGCACAGCTCGCAATACCTATCTAATCCAACGCTTTTCAGACCTCCTAACTGATGAAAAAGTTATACACACTTCTGT
GAATAATTTGGAAACAACTGTGGAAAAATATATCTTGACTGAGGAAAATTTCTTGAAAATCAACCCTATGATTGGAATAA
CGGATGAGGATATTCAAAATGTTTTTGGAGAATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(331-528)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD7NGS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.633

95.281

0.397