Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SanJ4206_RS07540 Genome accession   NZ_CP012719
Coordinates   1544801..1545589 (-) Length   262 a.a.
NCBI ID   WP_003028802.1    Uniprot ID   A0ABR7CS16
Organism   Streptococcus anginosus strain J4206     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539801..1550589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4206_RS07520 (SanJ4206_1454c) gatA 1540132..1541598 (-) 1467 WP_003028819.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  SanJ4206_RS07525 (SanJ4206_1455c) gatC 1541598..1541900 (-) 303 WP_003028817.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SanJ4206_RS07530 (SanJ4206_1456c) aspS 1541977..1543716 (-) 1740 WP_157622096.1 aspartate--tRNA ligase -
  SanJ4206_RS07535 (SanJ4206_1457c) - 1544226..1544801 (-) 576 WP_003028804.1 cysteine hydrolase family protein -
  SanJ4206_RS07540 (SanJ4206_1458c) codY 1544801..1545589 (-) 789 WP_003028802.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SanJ4206_RS07545 (SanJ4206_1459c) - 1545754..1546968 (-) 1215 WP_003039623.1 pyridoxal phosphate-dependent aminotransferase -
  SanJ4206_RS07550 (SanJ4206_1460) - 1547120..1547572 (+) 453 WP_003028799.1 universal stress protein -
  SanJ4206_RS07555 - 1547659..1548998 (+) 1340 WP_100069415.1 IS3 family transposase -
  SanJ4206_RS07560 (SanJ4206_1463c) - 1549049..1550437 (-) 1389 WP_003027382.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29723.03 Da        Isoelectric Point: 5.0797

>NTDB_id=136087 SanJ4206_RS07540 WP_003028802.1 1544801..1545589(-) (codY) [Streptococcus anginosus strain J4206]
MANLLAKTRKITSILRRSDERLQDELPYNAITQQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKIFPEEYV
RTANLMYDTEANLPVNHDLSIFPVETKDEFPDGLTTISPIHVSGIRLGTLIVWRNDKEFDDDDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=136087 SanJ4206_RS07540 WP_003028802.1 1544801..1545589(-) (codY) [Streptococcus anginosus strain J4206]
ATGGCAAACTTATTAGCAAAAACACGAAAAATTACATCTATTTTGCGTCGTTCAGATGAGCGATTACAGGATGAATTACC
TTACAATGCAATTACCCAGCAGTTAGCTGAAATTATGGATTGCAATGCCTGCATTGTAAACAGTAAAGGGCGTCTTTTGG
GGTATTTCATGCGCTACAAGACGAATAATGACCGAGTGGAAGCATTTTATCAAACGAAAATCTTCCCAGAAGAATATGTT
CGCACAGCGAATTTAATGTATGACACAGAAGCCAATCTTCCTGTCAATCATGATTTGTCAATTTTTCCTGTCGAAACCAA
AGATGAATTTCCAGATGGCTTGACGACAATTTCACCTATCCACGTTTCAGGGATTCGCTTAGGGACCTTGATTGTTTGGC
GCAATGATAAAGAATTTGACGATGATGATCTAATCTTAGTAGAAATTGCAAGTACAGTGGTTGGTATTCAGTTACTCAAT
TTCCAACGAGAAGAAGATGAAAAAAATATTCGTCGCAGAACAGCGGTAACCATGGCTGTGAATACTTTGTCTTATTCAGA
ATTACGAGCTGTTTCAGCTATTTTGGGTGAATTAAACGGCAATGAAGGTCAGTTAACAGCATCGGTCATTGCGGATCGTA
TTGGCATCACTCGCTCAGTGATTGTCAATGCTCTACGCAAACTAGAGAGTGCAGGTATTATTGAAAGTCGCTCTCTAGGA
ATGAAAGGAACCTATCTTAAAGTCCTTATTCCAGATGTCTTTGAAGAGATTAAAAAGAGAGATTACTGA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

61.832

100

0.618
  codY Bacillus subtilis subsp. subtilis str. 168

50.407

93.893

0.473

Multiple sequence alignment