Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SanJ4206_RS01310 Genome accession   NZ_CP012719
Coordinates   256948..258219 (-) Length   423 a.a.
NCBI ID   WP_003028906.1    Uniprot ID   A0ABD7ND90
Organism   Streptococcus anginosus strain J4206     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 251948..263219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4206_RS01280 (SanJ4206_0220) - 252055..252822 (+) 768 WP_003028537.1 epoxyqueuosine reductase QueH -
  SanJ4206_RS01285 (SanJ4206_0221) - 253009..253647 (+) 639 WP_022525275.1 deoxynucleoside kinase -
  SanJ4206_RS01290 (SanJ4206_0222) - 253713..254372 (+) 660 WP_003028539.1 HD domain-containing protein -
  SanJ4206_RS01295 (SanJ4206_0223c) - 254445..254960 (-) 516 WP_003028540.1 DUF308 domain-containing protein -
  SanJ4206_RS01300 (SanJ4206_0224) - 255302..256558 (+) 1257 WP_157622003.1 ISL3 family transposase -
  SanJ4206_RS01310 rarA 256948..258219 (-) 1272 WP_003028906.1 replication-associated recombination protein A Machinery gene
  SanJ4206_RS01315 (SanJ4206_0226) - 258321..258791 (+) 471 WP_003028904.1 DUF3013 family protein -
  SanJ4206_RS01320 (SanJ4206_0227) - 258841..259284 (+) 444 WP_003028903.1 NUDIX hydrolase -
  SanJ4206_RS01325 (SanJ4206_0228) - 259281..259760 (+) 480 WP_003028902.1 GNAT family N-acetyltransferase -
  SanJ4206_RS01330 (SanJ4206_0229) prmA 259764..260717 (+) 954 WP_003028901.1 50S ribosomal protein L11 methyltransferase -
  SanJ4206_RS01335 (SanJ4206_0230) - 260718..261461 (+) 744 WP_003028900.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SanJ4206_RS09825 (SanJ4206_0231) - 261627..261773 (+) 147 WP_003028899.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46951.40 Da        Isoelectric Point: 6.1924

>NTDB_id=136029 SanJ4206_RS01310 WP_003028906.1 256948..258219(-) (rarA) [Streptococcus anginosus strain J4206]
MPDNLAIRMRPKNINQVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLMLLLDEIHRLDKTKQDFLLPLLENGLIIMIGATTENPFFSVTPAIRSRVQIFELEPLTNDDIKQAIQ
TALTDTERGFDFPVQLDDDALDFITTSTNGDLRSAFNSLDLAVLSTKEDTEGVRHITLDIMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANIV
IDLALSPKSNSAYVAMDKALSDLRQNGNLAIPRHLRDGHYAGSKELGNAQDYKYPHNYPGNWVQQDYLPEKIKNADYFTP
NENGKYERALGMTKNKIEQLKNH

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=136029 SanJ4206_RS01310 WP_003028906.1 256948..258219(-) (rarA) [Streptococcus anginosus strain J4206]
ATGCCAGACAATTTAGCGATTCGCATGCGGCCTAAAAATATCAATCAGGTCATCGGTCAGAAACATCTGGTTGGCGAAGG
AAAAATCATTCGTCGCATGGTGGAAGCCAATCGCCTGTCTTCCATGATTCTCTACGGTCCACCAGGGATTGGCAAGACTT
CAATTGCCTCGGCTATTGCAGGAACTACCAAATTTGCTTTTCGGACCTTTAATGCTACCGTCGATAGTAAAAAGCGCCTG
CAAGAGATTGCAGAAGAAGCCAAATTCTCTGGTGGTTTAATGCTACTGTTAGATGAGATTCACCGCTTGGATAAGACCAA
ACAAGACTTCCTCCTACCGCTCTTGGAAAACGGTCTAATCATCATGATTGGTGCCACGACAGAAAATCCTTTTTTCTCCG
TCACTCCCGCTATTCGCAGCCGGGTACAGATTTTCGAGCTGGAACCTCTGACAAATGATGATATTAAACAAGCCATTCAA
ACAGCCCTGACGGACACCGAACGAGGTTTTGATTTTCCTGTCCAGCTAGATGATGACGCTCTGGATTTCATTACCACTTC
CACCAACGGTGACCTGCGCTCAGCCTTTAATTCTCTAGATTTAGCAGTTCTCTCTACCAAAGAGGATACTGAAGGGGTTC
GCCATATCACTCTGGATATTATGGAAAACAGCCTGCAAAAGAGCTACATTACTATGGACAAAGACGGAGACGGGCACTAT
GACGTTCTGTCCGCCTTACAGAAGTCTATTCGCGGGTCTGATGTCAATGCCAGTCTCCATTATGCAGCTCGCTTGATTGA
AGCTGGAGACCTTCCCAGTCTTGCACGACGTCTGACGGTCATCGCTTATGAGGACATTGGTCTGGCAAACCCCGATGCTC
AGATTCATACGGTGACTGCACTTGAAGCCGCTCAAAAAATTGGATTCCCAGAAGCTCGCATCCTCATTGCCAACATTGTC
ATTGACCTAGCGCTCTCTCCTAAGTCCAACTCGGCCTACGTAGCCATGGACAAGGCGCTCTCTGACTTGCGCCAGAACGG
AAATCTCGCTATCCCTCGCCATCTACGAGATGGTCACTACGCTGGCAGTAAGGAGCTGGGAAATGCGCAAGATTACAAAT
ATCCACATAACTATCCTGGTAATTGGGTGCAGCAAGACTACCTTCCTGAAAAAATTAAAAATGCCGATTATTTCACTCCG
AACGAAAATGGGAAGTACGAACGAGCCCTTGGCATGACTAAAAATAAGATTGAACAACTCAAAAACCACTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD7ND90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.287

98.818

0.596