Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FORC10_RS27025 Genome accession   NZ_CP010272
Coordinates   5308169..5308948 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain FORC_010     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 5303169..5313948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC10_RS27005 (FORC10_5127) trmFO 5303823..5305127 (+) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FORC10_RS27010 (FORC10_5128) xerC 5305193..5306092 (+) 900 WP_025709042.1 tyrosine recombinase XerC -
  FORC10_RS27015 (FORC10_5129) hslV 5306135..5306677 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  FORC10_RS27020 (FORC10_5130) hslU 5306700..5308091 (+) 1392 WP_046392968.1 ATP-dependent protease ATPase subunit HslU -
  FORC10_RS27025 (FORC10_5131) codY 5308169..5308948 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FORC10_RS27030 (FORC10_5132) rpsB 5309296..5309997 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  FORC10_RS27035 (FORC10_5133) tsf 5310101..5310988 (+) 888 WP_001018578.1 translation elongation factor Ts -
  FORC10_RS27040 (FORC10_5134) pyrH 5311055..5311777 (+) 723 WP_000042668.1 UMP kinase -
  FORC10_RS27045 (FORC10_5135) frr 5311780..5312337 (+) 558 WP_000531501.1 ribosome recycling factor -
  FORC10_RS27050 (FORC10_5136) uppS 5312423..5313199 (+) 777 WP_000971296.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=135677 FORC10_RS27025 WP_000421290.1 5308169..5308948(+) (codY) [Bacillus cereus strain FORC_010]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=135677 FORC10_RS27025 WP_000421290.1 5308169..5308948(+) (codY) [Bacillus cereus strain FORC_010]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment