Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RE92_RS00100 Genome accession   NZ_CP010268
Coordinates   36277..38046 (-) Length   589 a.a.
NCBI ID   WP_040101334.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain Sb3-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 31277..43046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE92_RS00095 (RE92_00095) rcrQ 34440..36290 (-) 1851 WP_040101333.1 ABC transporter ATP-binding protein Regulator
  RE92_RS00100 (RE92_00100) rcrP 36277..38046 (-) 1770 WP_040101334.1 ABC transporter ATP-binding protein Regulator
  RE92_RS00105 (RE92_00105) - 38126..38533 (-) 408 WP_013371190.1 MarR family winged helix-turn-helix transcriptional regulator -
  RE92_RS00110 (RE92_00110) folE2 38764..39717 (-) 954 Protein_21 GTP cyclohydrolase FolE2 -
  RE92_RS00115 (RE92_00115) - 39734..40744 (-) 1011 WP_040101335.1 CobW family GTP-binding protein -
  RE92_RS00120 (RE92_00120) rpsN 41185..41454 (-) 270 WP_040101336.1 30S ribosomal protein S14 -
  RE92_RS00125 (RE92_00125) - 41486..41740 (-) 255 WP_013371187.1 dCTP deaminase domain-containing protein -
  RE92_RS00130 (RE92_00130) - 42103..42906 (-) 804 WP_040101337.1 AAA family ATPase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65041.33 Da        Isoelectric Point: 7.0453

>NTDB_id=135594 RE92_RS00100 WP_040101334.1 36277..38046(-) (rcrP) [Paenibacillus polymyxa strain Sb3-1]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPMSELLIPGIYMLLCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYQEEKFGQANAELTNTNLFANRLMAM
VGPGMTFIMSGLSVSIYWIGTYLINGAAVPDRITLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIIDGHETAGEEGVMGQVEFRNVSFKYPDAEEPALRNISFTAKQGETVAFIGATGSGKTSVINLISRFYDVTEGEVLVD
GVNVRNYKQQTLHNKIGYVPQRAVLFSGTVASNVSYGDNGRAEVSEKLVKAAVEIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRVLRSALKQETGHATTLIVAQRIGTIKDADRIIVLDQGEIVGNGT
HEELMANCSTYQEIAYSQLSKEELVHGQE

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=135594 RE92_RS00100 WP_040101334.1 36277..38046(-) (rcrP) [Paenibacillus polymyxa strain Sb3-1]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTTCTTTGCAGCTTGGCCTTCATCGTTGTGCAGGT
GTGGCTGGATTTGAAGCTGCCTGATTATATGGCCGAAATTACAACCAAGCTGCAAACCGCCGGAACGCCGATGTCGGAAC
TGCTGATTCCCGGTATTTATATGCTGTTATGTGCTGTCGGCAGTATGATTGCATCTATTATTGTCGGCTATTTTGCGGCA
AAGGTCGCGGCAGGGCTGGCCATGCGTCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCCATGGAAGAGATGAA
CAGCTTTTCAACAGCCAGCCTTATCACCCGCTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAGATTGCGGATAAAAACTGGCAGTGGACCGCCTCT
ACAGGAGTGGCTGTGGCTGTCCTGATCCTGATGCTGAGTGTCATTGTTATTTTCGCTCTTCCGAGTTTCCAAAAAATCCA
ACGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGACCGGGCTTCGGGTGGTGCGCGCTTATAATGCAGATC
AGTATCAGGAGGAGAAGTTCGGACAGGCCAATGCAGAATTGACAAATACAAACCTGTTTGCGAACCGGTTAATGGCAATG
GTTGGTCCGGGGATGACCTTTATTATGTCGGGTCTGAGTGTCTCGATCTATTGGATTGGCACATACCTGATTAACGGAGC
GGCCGTGCCGGACCGCATTACGCTATTCTCTAATATGGTCGTATTCTCCTCATATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATATTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATTATGGAGGTATTGAATACCGAA
TCTCGCATCATCGACGGACATGAGACAGCTGGAGAAGAGGGCGTTATGGGTCAGGTGGAATTTCGTAATGTCAGCTTCAA
ATATCCGGATGCCGAGGAGCCTGCGCTTCGCAACATTAGCTTTACGGCAAAACAGGGCGAGACGGTTGCCTTTATTGGTG
CAACAGGCAGCGGCAAAACCAGTGTGATCAATCTGATTTCCCGTTTCTACGATGTGACTGAGGGTGAGGTACTTGTGGAT
GGCGTGAATGTCAGAAACTATAAGCAGCAGACACTTCATAACAAAATCGGGTATGTCCCACAGAGAGCCGTACTTTTCAG
CGGTACAGTGGCTTCCAACGTTTCGTATGGTGATAACGGCAGAGCAGAAGTTTCGGAGAAACTCGTCAAAGCCGCTGTGG
AGATTGCCCAGGGTACGGAGTTTGTCGAAAAAATGGACGGTCAATATCAAGGACGGATTTCACAAGGTGGAGCGAACGTG
TCGGGTGGTCAAAAGCAGCGTCTGTCCATTGCGCGTGCCATCTACCGTCAGCCAGAGATTTACATCTTCGATGATTCCTT
CTCGGCACTCGACTACAGAACAGACCGGGTCCTGCGCTCTGCGCTTAAACAAGAAACCGGCCATGCTACGACACTCATTG
TGGCTCAGCGCATAGGCACCATTAAGGACGCTGACCGGATTATTGTTCTCGACCAGGGCGAGATTGTAGGGAACGGCACA
CATGAAGAGCTGATGGCGAATTGCAGCACCTATCAGGAAATCGCTTATTCGCAGCTTTCGAAGGAGGAACTCGTACATGG
ACAAGAATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.667

100

0.526

Multiple sequence alignment