Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RN86_RS08005 Genome accession   NZ_CP012648
Coordinates   1637304..1639082 (+) Length   592 a.a.
NCBI ID   WP_053794591.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1632304..1644082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS07985 (RN86_07980) rplJ 1633681..1634181 (+) 501 WP_012000594.1 50S ribosomal protein L10 -
  RN86_RS07990 (RN86_07985) rplL 1634255..1634623 (+) 369 WP_008808621.1 50S ribosomal protein L7/L12 -
  RN86_RS07995 (RN86_07990) - 1634835..1635296 (+) 462 WP_012000592.1 hypothetical protein -
  RN86_RS08000 (RN86_07995) rcrP 1635558..1637294 (+) 1737 WP_053794590.1 ABC transporter ATP-binding protein Regulator
  RN86_RS08005 (RN86_08000) rcrQ 1637304..1639082 (+) 1779 WP_053794591.1 ABC transporter ATP-binding protein Regulator
  RN86_RS08010 (RN86_08005) - 1639137..1639691 (+) 555 WP_008808625.1 GNAT family N-acetyltransferase -
  RN86_RS08015 (RN86_08010) brnQ 1639841..1641166 (+) 1326 WP_053794592.1 branched-chain amino acid transport system II carrier protein -
  RN86_RS08020 (RN86_08015) - 1641331..1641558 (+) 228 WP_053794593.1 hypothetical protein -
  RN86_RS08025 (RN86_08020) - 1641637..1641999 (+) 363 WP_053794594.1 hypothetical protein -
  RN86_RS08030 (RN86_08025) - 1642195..1642740 (+) 546 WP_053794595.1 hypothetical protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66682.81 Da        Isoelectric Point: 5.1526

>NTDB_id=135506 RN86_RS08005 WP_053794591.1 1637304..1639082(+) (rcrQ) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MEKKHSFARLWSYLKVYKASVFFAVFLKILSVVMSVLEPFVLGLAITELTSNLLDMAKGVEGAHINVTYVGWVMVLYFIR
ALFYEIGSYYSNYFMTNAVQNTIRDLRNELSKKINHIPVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVVNAVFTIS
LVMFMVLYLNLSLALLVIISIPLTYFAANFILKKSQPYFKKQADILGEMNGFVQENLSGFNVLKLYGREEASSQDFEAIT
QNLQEVGFKASFISGLMMPVLNAISDLTYLLVAVIGGLQVISGQLTIGNMQAFVQYVWQVSQPIQNLTQLAGQLQSAKSS
LDRVFQVLDEADEVNDVSERLEHDLTGQVSFHDVDFQYVADKPLIRNFNLEVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTKGEITVDGHDIRDLSRQDYRKQFGMVLQDAWLYEGTIKENLRFGNLQATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKTLMQGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYDLYQSQFSKKAEET

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=135506 RN86_RS08005 WP_053794591.1 1637304..1639082(+) (rcrQ) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGGAGAAAAAACATTCTTTTGCTCGTTTATGGAGCTATTTAAAAGTTTATAAAGCATCAGTCTTTTTTGCTGTTTTCCT
CAAGATTCTCAGTGTCGTTATGAGTGTTTTGGAGCCCTTTGTGTTGGGGCTTGCAATTACAGAACTGACTAGCAATCTTC
TGGATATGGCTAAGGGAGTTGAAGGAGCTCACATTAACGTCACTTATGTTGGTTGGGTCATGGTCTTGTATTTTATTCGA
GCACTCTTCTATGAAATCGGTTCTTACTATTCAAACTATTTCATGACCAATGCAGTACAAAATACCATCCGGGATTTGAG
AAATGAACTTAGTAAAAAAATTAATCATATTCCTGTATCATATTTTGATAAGCACCAGTTCGGGGATTTACTGGGCCGAT
TTACTAGCGATGTAGAGACAGTCTCAAATGCTTTGCAACAAAGCTTTTTGCAAGTAGTGAATGCTGTGTTTACTATTTCC
TTGGTTATGTTTATGGTTCTTTATCTAAACTTGTCACTTGCTCTGCTTGTGATTATCAGTATTCCTTTGACCTATTTTGC
GGCAAACTTTATATTGAAGAAATCTCAACCTTACTTTAAAAAGCAGGCTGATATTTTGGGAGAAATGAATGGCTTTGTCC
AAGAGAATCTGAGTGGTTTTAATGTTTTAAAACTTTACGGAAGAGAAGAGGCTTCCAGTCAAGACTTTGAAGCTATTACA
CAAAATCTTCAAGAAGTAGGTTTTAAGGCTAGTTTTATTTCAGGTTTGATGATGCCTGTTTTGAACGCGATTTCTGATTT
GACTTATTTACTTGTAGCAGTTATTGGTGGATTGCAAGTTATTTCTGGTCAATTAACAATTGGGAATATGCAAGCTTTTG
TTCAATATGTTTGGCAGGTTAGTCAGCCAATTCAAAACCTAACACAGCTAGCTGGCCAATTGCAAAGCGCCAAGTCTTCT
TTAGACCGGGTTTTCCAAGTACTGGACGAGGCAGACGAAGTCAATGATGTGTCTGAAAGACTAGAACATGACTTAACTGG
TCAGGTCAGCTTTCATGATGTAGACTTCCAGTATGTGGCAGATAAGCCACTCATTCGGAATTTCAATCTTGAAGTTAAAC
CAGGTGAGATGGTGGCCATTGTCGGTCCAACAGGAGCTGGTAAGACGACTCTGATCAATCTTCTTATGCGTTTCTATGAT
GTAACCAAGGGTGAGATTACTGTAGACGGACATGATATTCGAGACCTTTCCCGTCAGGACTACCGTAAACAGTTTGGTAT
GGTGTTGCAAGATGCTTGGCTTTACGAGGGAACGATCAAAGAAAATCTTCGTTTCGGGAATTTACAGGCCACTGATGAGG
AAATTGTAGAAGCGGCCAAGGCAGCTAATGTGGATCACTTTATCCGAACCTTGCCGGGTGGCTATAACATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCTGGGGCAGAAACAGTTGCTTACGATTGCACGAGCGCTTTTAGCAGATCCTAAGATTCT
GATTTTGGATGAAGCGACCTCATCAGTCGATACACGTCTTGAACTCTTGATTCAGAAGGCTATGAAGACACTCATGCAAG
GGCGGACCAGTTTTGTCATTGCTCACCGACTGTCAACCATTCAGGAGGCAGATAAGATTTTGGTGCTCAAGGATGGTCAG
ATTATCGAGCAAGGCAATCACGAGAGTCTTTTGGCAGATAAAGGATTTTATTATGACCTTTATCAAAGTCAATTTTCTAA
GAAAGCAGAAGAAACTTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.351

100

0.444