Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RN86_RS07505 Genome accession   NZ_CP012648
Coordinates   1540197..1541933 (+) Length   578 a.a.
NCBI ID   WP_053794567.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535197..1546933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS07485 (RN86_07480) - 1535289..1535654 (+) 366 WP_046165471.1 VOC family protein -
  RN86_RS07490 (RN86_07485) asnS 1535676..1537022 (+) 1347 WP_045503330.1 asparagine--tRNA ligase -
  RN86_RS07495 (RN86_07490) - 1537181..1538368 (+) 1188 WP_046165472.1 MFS transporter -
  RN86_RS07500 (RN86_07495) - 1538465..1540207 (+) 1743 WP_053794566.1 ABC transporter ATP-binding protein -
  RN86_RS07505 (RN86_07500) rcrQ 1540197..1541933 (+) 1737 WP_053794567.1 ABC transporter ATP-binding protein Regulator
  RN86_RS07510 (RN86_07505) - 1542053..1542640 (-) 588 WP_053794568.1 DUF4097 family beta strand repeat-containing protein -
  RN86_RS07515 (RN86_07510) - 1542627..1544030 (-) 1404 WP_053794569.1 MFS transporter -
  RN86_RS07520 (RN86_07515) - 1544221..1544856 (+) 636 WP_053794570.1 TetR/AcrR family transcriptional regulator -
  RN86_RS07525 (RN86_07520) - 1545189..1545917 (+) 729 WP_053794571.1 TraX family protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64379.28 Da        Isoelectric Point: 6.3496

>NTDB_id=135500 RN86_RS07505 WP_053794567.1 1540197..1541933(+) (rcrQ) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MKHKTSPSSLRRLTRDLLQARWLFLLASLGTVAQVALTVLLPVLIGNAVDSVLLPQADQHLMPILGQMLLVILANTLIQW
LNPLLYNQLVYRYSQQLRQGVIKKVHYLPLAYLDRQGTGDLVSRVTTDLEQLSNGLLMVFNQFFVGLLTILVTIISMARL
DFFLLLLVLLLTPLSLFLARFIARKSFSFFQRQTQARGAQTQLIEESLTQESLIQAFNAQDQFDTAFTRSNQTYADYSQA
AIFYSSTVNPSTRFINALIYALIVGFGAVRIIQGTGFTVGQLVTFLNYVNQYTKPFNDISSVMSELQSALACAERIYSVL
DQEEIAESGQEILQSEDVKGQISFEHVAFGYDPGKELIQDLNIRVPAASKVAIVGPTGAGKSTLINLLMRFYNVDSGLIS
LDGTPITHYTRASYRQQFGMVLQETWLKTATIHDNIAFGRPDASREEVIAAAKAANAHFFIQQLPQGYDTYLADAGDSLS
QGQRQLLTIARVFLAVPKILILDEATSSIDTRTEVLIQEAFSKLMVGRTSFIIAHRLSTIQNADIILVMVDGDIVEHGNH
QELMAARGVYYQMLTAQE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=135500 RN86_RS07505 WP_053794567.1 1540197..1541933(+) (rcrQ) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGAAGCATAAGACATCACCTAGCAGCTTGAGGCGTTTGACTCGAGACTTGCTACAGGCGCGCTGGCTTTTTCTCCTAGC
TAGTCTGGGAACGGTGGCTCAAGTGGCTTTGACTGTTCTTCTCCCAGTTTTAATCGGGAATGCGGTTGATAGTGTTCTTC
TTCCGCAAGCGGACCAGCATTTGATGCCGATTCTGGGCCAGATGCTGTTGGTTATCTTAGCCAATACGCTGATTCAGTGG
CTCAATCCCTTACTCTATAATCAGCTGGTCTATCGCTACAGCCAGCAGCTCCGTCAAGGCGTTATCAAGAAAGTTCACTA
TCTGCCTTTGGCTTATCTAGATCGGCAGGGAACCGGCGACTTGGTTAGTCGGGTGACGACTGATTTGGAGCAACTCAGCA
ATGGCCTGCTTATGGTTTTTAATCAATTTTTTGTGGGTTTGCTGACAATTTTAGTGACTATCATTAGTATGGCCAGATTG
GACTTTTTTCTCCTGCTTTTGGTTCTGCTTTTGACGCCCCTTTCTCTCTTCTTAGCTCGCTTTATTGCCAGAAAGAGTTT
TAGCTTTTTCCAACGGCAGACACAGGCCAGAGGAGCGCAGACCCAGCTGATTGAGGAAAGTCTGACCCAGGAAAGTTTGA
TTCAGGCTTTTAATGCTCAGGATCAGTTTGATACAGCTTTTACTCGCAGTAATCAAACCTATGCGGACTATTCTCAGGCG
GCTATTTTCTATTCTTCAACGGTAAATCCTTCGACTCGTTTTATCAATGCCCTAATCTATGCTTTGATTGTAGGCTTTGG
GGCTGTTCGAATCATTCAAGGAACAGGTTTTACGGTTGGGCAGTTGGTAACTTTTCTCAACTACGTCAACCAGTACACCA
AGCCTTTCAATGATATATCGTCAGTCATGTCGGAATTGCAGAGCGCTTTAGCTTGTGCGGAGCGAATTTACAGCGTTTTG
GACCAAGAAGAAATAGCAGAGTCAGGTCAAGAAATTCTTCAGTCTGAAGATGTCAAAGGACAGATTAGCTTTGAGCATGT
GGCTTTTGGCTATGACCCTGGCAAAGAGCTGATTCAGGATTTGAATATAAGGGTTCCAGCAGCTAGCAAGGTCGCAATTG
TCGGGCCAACTGGTGCTGGTAAGTCAACCCTGATCAATCTCCTCATGCGCTTTTACAATGTAGACAGTGGTCTTATTTCG
CTAGACGGTACTCCCATCACGCATTACACCAGAGCCTCTTATCGCCAGCAGTTTGGTATGGTACTGCAAGAGACTTGGCT
CAAGACGGCGACCATTCACGACAACATAGCCTTTGGCCGGCCAGACGCTAGCCGAGAAGAGGTCATTGCAGCTGCTAAGG
CAGCCAATGCTCATTTCTTTATCCAGCAGCTTCCTCAGGGTTATGACACCTATCTGGCGGATGCCGGGGACTCCCTGTCT
CAAGGTCAGCGGCAGCTCTTGACTATTGCCCGTGTCTTCTTGGCTGTTCCTAAAATCCTAATCTTGGACGAGGCGACTTC
CTCTATTGATACCCGAACAGAAGTTTTGATTCAGGAGGCTTTCAGCAAGCTCATGGTGGGACGGACTAGCTTTATCATCG
CCCACCGTCTGTCTACTATTCAAAATGCTGACATCATCCTCGTCATGGTAGATGGTGATATCGTCGAACATGGGAATCAT
CAGGAGCTCATGGCAGCCAGAGGCGTTTATTACCAAATGCTGACGGCGCAGGAGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(27-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.869

97.924

0.381

Multiple sequence alignment