Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   AMD33_RS06835 Genome accession   NZ_CP012588
Coordinates   1320118..1320861 (-) Length   247 a.a.
NCBI ID   WP_014608652.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MN-BM-A01     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1315118..1325861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD33_RS06805 (AMD33_06790) - 1315389..1316333 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  AMD33_RS06810 (AMD33_06795) sepM 1316418..1317494 (-) 1077 WP_011681549.1 SepM family pheromone-processing serine protease Regulator
  AMD33_RS06815 (AMD33_06800) coaD 1317472..1317969 (-) 498 WP_011681550.1 pantetheine-phosphate adenylyltransferase -
  AMD33_RS06820 (AMD33_06805) rsmD 1318003..1318542 (-) 540 WP_002951741.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AMD33_RS06825 (AMD33_06810) trxB 1318693..1319613 (-) 921 WP_011226467.1 thioredoxin-disulfide reductase -
  AMD33_RS06830 (AMD33_06815) - 1319679..1319903 (-) 225 WP_014621911.1 DUF4059 family protein -
  AMD33_RS06835 (AMD33_06820) amiE 1320118..1320861 (-) 744 WP_014608652.1 amino acid ABC transporter ATP-binding protein Regulator
  AMD33_RS06840 (AMD33_06825) - 1320861..1321607 (-) 747 WP_095559509.1 amino acid ABC transporter permease -
  AMD33_RS06845 (AMD33_06830) - 1322003..1322832 (-) 830 Protein_1333 transporter substrate-binding domain-containing protein -
  AMD33_RS06850 (AMD33_06835) - 1323292..1323525 (-) 234 WP_002947030.1 hypothetical protein -
  AMD33_RS06855 (AMD33_06840) dinB 1323823..1324926 (-) 1104 WP_014608654.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27649.79 Da        Isoelectric Point: 6.0538

>NTDB_id=134813 AMD33_RS06835 WP_014608652.1 1320118..1320861(-) (amiE) [Streptococcus thermophilus strain MN-BM-A01]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVAIVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFGTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDEEATKIAKEELAKVGLSNRENHYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=134813 AMD33_RS06835 WP_014608652.1 1320118..1320861(-) (amiE) [Streptococcus thermophilus strain MN-BM-A01]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTATTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCCG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGGAACAATTACCAAGGAGCAAATCCTTACCCTTCGCCGT
AAGTTGGCTATGGTTTTCCAACAGTTTAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTTAAGAT
TGTTAAGAAACTTTCTGACGAAGAAGCTACCAAGATTGCGAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATCATTACCCACGTCACTTGTCAGGTGGTCAAAAGCAACGTGTGGCCTTGGCCCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTCGACGAGCCGACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.585

100

0.36

Multiple sequence alignment