Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   A6701_RS27620 Genome accession   NZ_CP012583
Coordinates   6019611..6020135 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain PA_D22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6014611..6025135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6701_RS27605 (A6701_27605) aroB 6015739..6016845 (-) 1107 WP_069376936.1 3-dehydroquinate synthase -
  A6701_RS27610 (A6701_27610) aroK 6016895..6017413 (-) 519 WP_069376937.1 shikimate kinase AroK -
  A6701_RS27615 (A6701_27615) pilQ 6017425..6019557 (-) 2133 WP_069376938.1 type 4a pilus secretin PilQ Machinery gene
  A6701_RS27620 (A6701_27620) comL/pilP 6019611..6020135 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  A6701_RS27625 (A6701_27625) pilO 6020132..6020755 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  A6701_RS27630 (A6701_27630) pilN 6020752..6021348 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  A6701_RS27635 (A6701_27635) pilM 6021348..6022412 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  A6701_RS27640 (A6701_27640) - 6022597..6025068 (+) 2472 WP_043088268.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=134467 A6701_RS27620 WP_003116136.1 6019611..6020135(-) (comL/pilP) [Pseudomonas aeruginosa strain PA_D22]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=134467 A6701_RS27620 WP_003116136.1 6019611..6020135(-) (comL/pilP) [Pseudomonas aeruginosa strain PA_D22]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAC
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCAGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GACGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362