Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NF53_RS19640 Genome accession   NZ_CP010106
Coordinates   3890349..3891128 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis serovar indiana strain HD521     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3885349..3896128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF53_RS19615 (NF53_3808) uppS 3886097..3886873 (-) 777 WP_000971296.1 isoprenyl transferase -
  NF53_RS19620 (NF53_3809) frr 3886959..3887516 (-) 558 WP_000531501.1 ribosome recycling factor -
  NF53_RS19625 (NF53_3810) pyrH 3887519..3888241 (-) 723 WP_000042668.1 UMP kinase -
  NF53_RS19630 (NF53_3811) tsf 3888308..3889195 (-) 888 WP_001018578.1 translation elongation factor Ts -
  NF53_RS19635 (NF53_3812) rpsB 3889299..3890000 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  NF53_RS19640 (NF53_3813) codY 3890349..3891128 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NF53_RS19645 (NF53_3814) hslU 3891206..3892597 (-) 1392 WP_000550087.1 ATP-dependent protease ATPase subunit HslU -
  NF53_RS19650 (NF53_3815) hslV 3892620..3893162 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  NF53_RS19655 (NF53_3816) xerC 3893205..3894104 (-) 900 WP_001101241.1 tyrosine recombinase XerC -
  NF53_RS19660 (NF53_3817) trmFO 3894170..3895474 (-) 1305 WP_000213001.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=134233 NF53_RS19640 WP_000421290.1 3890349..3891128(-) (codY) [Bacillus thuringiensis serovar indiana strain HD521]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=134233 NF53_RS19640 WP_000421290.1 3890349..3891128(-) (codY) [Bacillus thuringiensis serovar indiana strain HD521]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment