Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | BG06_RS21475 | Genome accession | NZ_CP010088 |
| Coordinates | 4004477..4005256 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus thuringiensis strain 97-27 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3963968..4032247 | 4004477..4005256 | within | 0 |
Gene organization within MGE regions
Location: 3963968..4032247
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BG06_RS21275 (BG06_4116) | def | 3964377..3964847 (+) | 471 | WP_000279468.1 | peptide deformylase | - |
| BG06_RS21280 (BG06_4117) | fmt | 3964871..3965815 (+) | 945 | WP_000598785.1 | methionyl-tRNA formyltransferase | - |
| BG06_RS21285 (BG06_4118) | rsmB | 3965812..3967146 (+) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| BG06_RS21290 (BG06_4119) | rlmN | 3967151..3968239 (+) | 1089 | WP_000450546.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| BG06_RS21295 (BG06_4120) | - | 3968244..3968996 (+) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| BG06_RS21300 (BG06_4121) | prkC | 3969005..3970978 (+) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| BG06_RS21305 (BG06_4122) | rsgA | 3971247..3972128 (+) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| BG06_RS21310 (BG06_4123) | rpe | 3972131..3972775 (+) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| BG06_RS21315 (BG06_4124) | - | 3972874..3973554 (+) | 681 | WP_042515256.1 | thiamine diphosphokinase | - |
| BG06_RS21320 | spoVM | 3973621..3973701 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| BG06_RS21325 (BG06_4125) | rpmB | 3973775..3973963 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| BG06_RS21330 (BG06_4126) | - | 3974342..3974704 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| BG06_RS21335 (BG06_4127) | - | 3974727..3976403 (+) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| BG06_RS21340 (BG06_4128) | recG | 3976693..3978741 (+) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| BG06_RS21345 (BG06_4129) | fapR | 3978830..3979423 (+) | 594 | WP_000747352.1 | transcription factor FapR | - |
| BG06_RS21350 (BG06_4130) | plsX | 3979420..3980412 (+) | 993 | WP_000684110.1 | phosphate acyltransferase PlsX | - |
| BG06_RS21355 (BG06_4131) | fabD | 3980427..3981371 (+) | 945 | WP_000516948.1 | ACP S-malonyltransferase | - |
| BG06_RS21360 (BG06_4132) | fabG | 3981371..3982111 (+) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| BG06_RS21365 (BG06_4133) | acpP | 3982181..3982414 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| BG06_RS21370 (BG06_4134) | rncS | 3982473..3983210 (+) | 738 | WP_001146873.1 | ribonuclease III | - |
| BG06_RS21375 (BG06_4135) | smc | 3983357..3986926 (+) | 3570 | WP_000478987.1 | chromosome segregation protein SMC | - |
| BG06_RS21380 (BG06_4136) | ftsY | 3986942..3987931 (+) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| BG06_RS21385 (BG06_4137) | - | 3988065..3988397 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| BG06_RS21390 (BG06_4138) | ffh | 3988410..3989759 (+) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
| BG06_RS21395 (BG06_4139) | rpsP | 3989860..3990132 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| BG06_RS21400 (BG06_4140) | - | 3990147..3990374 (+) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| BG06_RS21405 (BG06_4141) | rimM | 3990495..3991010 (+) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| BG06_RS21410 (BG06_4142) | trmD | 3991010..3991744 (+) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BG06_RS21415 (BG06_4143) | rplS | 3991891..3992235 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| BG06_RS21420 (BG06_4144) | lepB | 3992337..3992888 (+) | 552 | WP_000711857.1 | signal peptidase I | - |
| BG06_RS21425 (BG06_4145) | ylqF | 3992909..3993799 (+) | 891 | WP_000236706.1 | ribosome biogenesis GTPase YlqF | - |
| BG06_RS21430 (BG06_4146) | rnhB | 3993851..3994624 (+) | 774 | WP_001174721.1 | ribonuclease HII | - |
| BG06_RS21435 (BG06_4147) | sucC | 3994818..3995978 (+) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| BG06_RS21440 (BG06_4148) | sucD | 3995998..3996900 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| BG06_RS21445 (BG06_4149) | dprA | 3996988..3997857 (+) | 870 | WP_000818032.1 | DNA-processing protein DprA | - |
| BG06_RS21450 (BG06_4150) | topA | 3998002..4000080 (+) | 2079 | WP_001286968.1 | type I DNA topoisomerase | - |
| BG06_RS21455 (BG06_4151) | trmFO | 4000131..4001435 (+) | 1305 | WP_001991958.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| BG06_RS21460 (BG06_4152) | xerC | 4001501..4002400 (+) | 900 | WP_001101227.1 | tyrosine recombinase XerC | - |
| BG06_RS21465 (BG06_4153) | hslV | 4002443..4002985 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| BG06_RS21470 (BG06_4154) | hslU | 4003008..4004399 (+) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| BG06_RS21475 (BG06_4155) | codY | 4004477..4005256 (+) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| BG06_RS21480 (BG06_4156) | rpsB | 4005608..4006309 (+) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| BG06_RS21485 (BG06_4157) | tsf | 4006413..4007300 (+) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| BG06_RS21490 (BG06_4158) | pyrH | 4007367..4008089 (+) | 723 | WP_000042663.1 | UMP kinase | - |
| BG06_RS21495 (BG06_4159) | frr | 4008092..4008649 (+) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| BG06_RS21500 (BG06_4160) | uppS | 4008735..4009511 (+) | 777 | WP_000971301.1 | isoprenyl transferase | - |
| BG06_RS21505 (BG06_4161) | cdsA | 4009529..4010320 (+) | 792 | WP_000813583.1 | phosphatidate cytidylyltransferase | - |
| BG06_RS21510 (BG06_4162) | dxr | 4010344..4011486 (+) | 1143 | WP_000790356.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| BG06_RS21515 (BG06_4163) | rseP | 4011503..4012759 (+) | 1257 | WP_001090229.1 | RIP metalloprotease RseP | - |
| BG06_RS21520 (BG06_4164) | - | 4012869..4014569 (+) | 1701 | WP_000814310.1 | proline--tRNA ligase | - |
| BG06_RS21525 (BG06_4165) | - | 4014694..4018995 (+) | 4302 | WP_000059989.1 | PolC-type DNA polymerase III | - |
| BG06_RS21530 (BG06_4166) | rimP | 4019328..4019798 (+) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| BG06_RS21535 (BG06_4167) | nusA | 4019816..4020922 (+) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| BG06_RS21540 (BG06_4168) | rnpM | 4020934..4021206 (+) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| BG06_RS21545 (BG06_4169) | - | 4021207..4021518 (+) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| BG06_RS21550 (BG06_4170) | infB | 4021523..4023583 (+) | 2061 | WP_000036341.1 | translation initiation factor IF-2 | - |
| BG06_RS21555 (BG06_4171) | - | 4023580..4023861 (+) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| BG06_RS21560 (BG06_4172) | rbfA | 4023877..4024233 (+) | 357 | WP_000776442.1 | 30S ribosome-binding factor RbfA | - |
| BG06_RS21565 (BG06_4173) | truB | 4024320..4025243 (+) | 924 | WP_000399346.1 | tRNA pseudouridine(55) synthase TruB | - |
| BG06_RS21570 (BG06_4174) | ribF | 4025287..4026258 (+) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| BG06_RS21575 (BG06_4175) | rpsO | 4026359..4026628 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| BG06_RS21580 (BG06_4176) | pnp | 4026789..4028927 (+) | 2139 | WP_000076750.1 | polyribonucleotide nucleotidyltransferase | - |
| BG06_RS21585 (BG06_4177) | - | 4029079..4029978 (+) | 900 | WP_000647537.1 | polysaccharide deacetylase family protein | - |
| BG06_RS21590 (BG06_4178) | - | 4030065..4031306 (+) | 1242 | WP_000592994.1 | M16 family metallopeptidase | - |
| BG06_RS21595 (BG06_4179) | - | 4031433..4031684 (+) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=134137 BG06_RS21475 WP_000421288.1 4004477..4005256(+) (codY) [Bacillus thuringiensis strain 97-27]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=134137 BG06_RS21475 WP_000421288.1 4004477..4005256(+) (codY) [Bacillus thuringiensis strain 97-27]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |