Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BG06_RS18455 Genome accession   NZ_CP010088
Coordinates   3463434..3465773 (+) Length   779 a.a.
NCBI ID   WP_000941257.1    Uniprot ID   Q6HDB7
Organism   Bacillus thuringiensis strain 97-27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3458434..3470773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG06_RS18440 (BG06_3563) - 3459466..3459750 (+) 285 WP_000886981.1 post-transcriptional regulator -
  BG06_RS18445 (BG06_3564) secDF 3460021..3462285 (+) 2265 WP_001119059.1 protein translocase subunit SecDF -
  BG06_RS18450 (BG06_3565) - 3462439..3463332 (+) 894 WP_000409725.1 cation diffusion facilitator family transporter -
  BG06_RS18455 (BG06_3566) recJ 3463434..3465773 (+) 2340 WP_000941257.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BG06_RS18460 (BG06_3567) - 3465821..3466333 (+) 513 WP_000346214.1 adenine phosphoribosyltransferase -
  BG06_RS18465 (BG06_3568) relA 3466543..3468726 (+) 2184 WP_001262810.1 GTP diphosphokinase -
  BG06_RS18470 (BG06_3569) - 3468744..3469184 (+) 441 WP_001266954.1 D-tyrosyl-tRNA(Tyr) deacylase -
  BG06_RS30130 (BG06_3570) - 3469372..3469548 (+) 177 WP_001242605.1 hypothetical protein -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88199.82 Da        Isoelectric Point: 4.9055

>NTDB_id=134128 BG06_RS18455 WP_000941257.1 3463434..3465773(+) (recJ) [Bacillus thuringiensis strain 97-27]
MLQPKTRWKEKEYNGERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSEDPEEAKELAEEIDELNKL
RKDIVKKITEEAIAEVETNFPPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDVFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANVAELPKEKITMVYFSEEVLHKFSLEDYKEHMMHASEVTELDDQYIVFLDLPKGTDELRE
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLSQKSPFSLRQYGEQLCQHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEIEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=134128 BG06_RS18455 WP_000941257.1 3463434..3465773(+) (recJ) [Bacillus thuringiensis strain 97-27]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATGGCGAGCGAGTGAGTGAATTAGCAAGTAAATTACAATT
ATCACCACTTGTCGTTTCGTTATTCCTCGGTAGAGGACTAGATACAGAAGATAAAATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCATGATCCATTTTTATTAGAAGGAATGGATAGAACAGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGACTACGATGCGGACGGAGTAAGTAGTACGACTGTGTTATATCTTGCTTTGCAAGAATT
AGGTGCAGATGTAGAATTTTATATCCCAAACCGTTTTACAGAAGGTTATGGACCAAACGAAGAAGCATTTCGTTGGGCGC
ATAGCGCAGGATTCTCATTAATTATTACTGTCGATACTGGTATCGCAGCTGTACATGAAGCGAAAGTAGCGAAGGAACTT
GGGATAGATCTAATTATTACAGATCACCATGAGCCGCCACCAGAATTGCCAGAAGCACTTGCGATTATTCACCCGAAATT
AGATGGCGGTGTGTATCCGTTTCACTATTTAGCGGGCGTTGGTGTTGCGTTTAAAGTTGCGCATGCACTACTGGGCCGTG
TACCAGAACATTTATTAGAAATTGCAGTAATTGGTACAGTGGCTGATTTAGTATCACTTCATGGTGAGAATAGATTGCTA
GTGAAGCGCGGTTTAAAACATATGCGCATGACGAAAAATATCGGACTAAAGGCGCTATTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAGAGTATTGGCTTCTCAATCGCACCTCGTATTAATGCAGTTGGACGTTTAGAAGATGCTACGC
CGGCTGTACATCTTTTATTATCAGAGGATCCGGAAGAAGCGAAAGAGTTGGCTGAAGAAATTGATGAGCTGAACAAACTG
CGAAAAGATATTGTAAAGAAAATTACAGAAGAAGCTATCGCCGAAGTGGAAACGAATTTTCCGCCTGAAGACAATAAAGT
ATTAGTGCTTGCAAAAGAAGGATGGAATCCAGGTGTAATTGGAATTGTCGCTTCTAAATTAGTTGAACGTTTTTATCGTC
CGACGATTGTATTATGCATTGATCCTGTAAAAGAAACTGCAAAAGGTTCAGCGCGTAGTATAGCGGGATTCGATTTGTTT
GCAAACTTGTCAGATTGTAGAGAGTTATTGCCACACTTCGGAGGACATCCGATGGCAGCGGGAATGACGCTACATATGAA
TGATGTAGATGAATTACGCCGCCGTTTAAATGAGCAAGCAGAGGTAATTTTAACAGAAGAAGATTTTATTCCAATTACAG
CTGTTGATGTTTTTTGTAAAGTGGAGGACGTAACACTTGCAGCAATTGAAGATATGCAAAAGTTGGCGCCATTTGGTGTT
GGAAATCCAAAGCCACGTATTGCGGTGAAGGATGCAGAGTTAGAAAGTATTCGTGCAATTGGATCCGACGGTTCACATTT
AAAAATGGCTCTTCGTGATGGACAAGCAACATTGGATACAATTGGATTTGGATTTGGTGCGTATGCAAAAGAAATTTCTC
CAGTTGCAAAAGTCTCTGTAATTGGGGAAGCGTCTATTAATGAATGGAATAATTTTAAGAAGCCACAACTAATGGTACAA
GATATTGCTGTAGAGGCATGGCAATTATTTGATTGGCGCAGTATGCGTAACGTAGAAGCAAATGTGGCAGAACTTCCGAA
AGAAAAAATAACGATGGTGTATTTTTCTGAAGAGGTATTGCATAAATTTTCTTTAGAAGACTATAAAGAGCATATGATGC
ATGCATCAGAAGTAACAGAATTAGATGATCAATACATCGTGTTCCTTGATTTGCCAAAAGGAACAGATGAATTACGAGAG
TTATTTAAAGTAGGGTTCCCGTCGCGAATCTATACACTATTTTATCAAGAGAATAATCATTTATTTAGTACTGTTCCAAC
GAGAGAACACTTTAAATGGTATTATTCGTTCTTGAGCCAAAAATCACCATTTTCTTTAAGACAATATGGAGAACAACTAT
GTCAACATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGACAAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAATAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6HDB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.972

99.358

0.526

Multiple sequence alignment