Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QR42_RS07735 Genome accession   NZ_CP010075
Coordinates   1563275..1564054 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus sp. WP8     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1558275..1569054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS07715 (QR42_07715) trmFO 1558979..1560283 (+) 1305 WP_039178506.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QR42_RS07720 (QR42_07720) xerC 1560346..1561263 (+) 918 WP_039178508.1 tyrosine recombinase XerC -
  QR42_RS07725 (QR42_07725) hslV 1561278..1561823 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  QR42_RS07730 (QR42_07730) hslU 1561840..1563240 (+) 1401 WP_039178511.1 HslU--HslV peptidase ATPase subunit -
  QR42_RS07735 (QR42_07735) codY 1563275..1564054 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QR42_RS07740 (QR42_07740) flgB 1564343..1564732 (+) 390 WP_039178512.1 flagellar basal body rod protein FlgB -
  QR42_RS07745 (QR42_07745) flgC 1564732..1565184 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  QR42_RS07750 (QR42_07750) fliE 1565196..1565513 (+) 318 WP_039178515.1 flagellar hook-basal body complex protein FliE -
  QR42_RS07755 (QR42_07755) fliF 1565563..1567155 (+) 1593 WP_039178517.1 flagellar basal-body MS-ring/collar protein FliF -
  QR42_RS07760 (QR42_07760) fliG 1567167..1568183 (+) 1017 WP_039178520.1 flagellar motor switch protein FliG -
  QR42_RS07765 (QR42_07765) fliH 1568176..1568940 (+) 765 WP_039178522.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=134044 QR42_RS07735 WP_007499612.1 1563275..1564054(+) (codY) [Bacillus sp. WP8]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=134044 QR42_RS07735 WP_007499612.1 1563275..1564054(+) (codY) [Bacillus sp. WP8]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCGGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGTTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCAGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAGAACCGTGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTCCAAATGGCGATTAGCTCTCTATCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTTGATGGAAACGAAGGTCTTCTTGTCGCAAGTAAAATTGCAGACCGTGTAGGGATCACTC
GTTCAGTGATCGTAAACGCATTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment