Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AMD29_RS09720 Genome accession   NZ_CP012419
Coordinates   1898780..1900048 (+) Length   422 a.a.
NCBI ID   WP_000774758.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SG-M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1893780..1905048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD29_RS09680 (AMD29_09675) prmA 1893969..1894922 (-) 954 WP_001099295.1 50S ribosomal protein L11 methyltransferase -
  AMD29_RS09685 (AMD29_09680) - 1894919..1895383 (-) 465 WP_306425667.1 MepB family protein -
  AMD29_RS09690 (AMD29_09685) - 1895501..1896217 (+) 717 WP_000859566.1 MerR family transcriptional regulator -
  AMD29_RS09695 (AMD29_09690) - 1896256..1896726 (-) 471 WP_000631753.1 GNAT family N-acetyltransferase -
  AMD29_RS09700 (AMD29_09695) - 1896698..1897156 (-) 459 WP_000376721.1 NUDIX hydrolase -
  AMD29_RS11545 (AMD29_09700) - 1897149..1897457 (-) 309 WP_001868493.1 hypothetical protein -
  AMD29_RS09710 (AMD29_09705) - 1897500..1897970 (-) 471 WP_001051336.1 DUF3013 family protein -
  AMD29_RS09715 (AMD29_09710) - 1898296..1898787 (+) 492 WP_000586891.1 GNAT family N-acetyltransferase -
  AMD29_RS09720 (AMD29_09715) rarA 1898780..1900048 (+) 1269 WP_000774758.1 replication-associated recombination protein A Machinery gene
  AMD29_RS09730 (AMD29_09725) - 1900638..1901747 (-) 1110 WP_000427224.1 FRG domain-containing protein -
  AMD29_RS09735 (AMD29_09730) - 1901887..1902096 (-) 210 WP_000572915.1 hypothetical protein -
  AMD29_RS09740 (AMD29_09735) - 1902185..1902325 (-) 141 WP_000128913.1 hypothetical protein -
  AMD29_RS09745 (AMD29_09740) - 1902348..1903478 (-) 1131 WP_001262282.1 site-specific integrase -
  AMD29_RS09750 (AMD29_09745) - 1903482..1903667 (-) 186 WP_000184043.1 DUF3173 domain-containing protein -
  AMD29_RS09755 (AMD29_09750) - 1903728..1904756 (-) 1029 WP_000483438.1 replication initiation factor domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46612.05 Da        Isoelectric Point: 6.5117

>NTDB_id=133697 AMD29_RS09720 WP_000774758.1 1898780..1900048(+) (rarA) [Streptococcus agalactiae strain SG-M1]
MADNLALRMRPRNINEIIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIITATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNAKDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=133697 AMD29_RS09720 WP_000774758.1 1898780..1900048(+) (rarA) [Streptococcus agalactiae strain SG-M1]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAATCATTGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGACCACCAGGTATCGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATCCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAA
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTATTACCGC
CACAAATGGAGACCTGCGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACAATGGATAAAAATGGAGATGGGCATTAT
GATGTCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCAAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCCTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAAGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTATTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.952

98.815

0.592