Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QR90_RS16515 Genome accession   NZ_CP010028
Coordinates   3529067..3530152 (+) Length   361 a.a.
NCBI ID   WP_039686174.1    Uniprot ID   A0A0A7KJF5
Organism   Deinococcus radiopugnans strain DY59     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3524067..3535152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR90_RS16490 (QR90_16490) - 3524067..3524306 (+) 240 WP_039687729.1 hypothetical protein -
  QR90_RS16495 (QR90_16495) - 3524464..3526032 (+) 1569 WP_039686167.1 dihydrolipoamide acetyltransferase family protein -
  QR90_RS16500 (QR90_16500) - 3526346..3526774 (+) 429 WP_039687731.1 hypothetical protein -
  QR90_RS16505 (QR90_16505) - 3526812..3527471 (+) 660 WP_039686169.1 response regulator transcription factor -
  QR90_RS16510 (QR90_16510) - 3527477..3528859 (+) 1383 WP_156123301.1 sensor histidine kinase -
  QR90_RS16515 (QR90_16515) dprA 3529067..3530152 (+) 1086 WP_039686174.1 DNA-processing protein DprA Machinery gene
  QR90_RS16520 (QR90_16520) - 3530161..3530448 (-) 288 WP_039686176.1 hypothetical protein -
  QR90_RS16525 (QR90_16525) - 3530481..3531443 (+) 963 WP_039686178.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 37186.65 Da        Isoelectric Point: 6.9172

>NTDB_id=133683 QR90_RS16515 WP_039686174.1 3529067..3530152(+) (dprA) [Deinococcus radiopugnans strain DY59]
MTRAAPTPDTSELLALLTLRLTPNLGPRRIEALRRHFGSAGAALCAPLTRLRDVPGLDARSVAGLGNAKAAAEAQAELEK
ARRMGVTLLGRGLDGYPEALEALGDPPPVLWVLGELPELSVVPRAVGIVGTRAASPHAVSLTRKISGELARADVVVVSGL
ARGIDTAAHGAAVEAGGHSIGILGSAVNVIYPRENGALAGRLTLISEYPLDTGPAQHHFPTRNRLIAALSAGTLVVEGER
KSGSLITATHALECGRTVFAVPGRAGDPRAAGPHALIRDGAVLTESAQDVLDELGWGQAPAAPSPDLPPAQARALAALNA
PATLDDLQATTGLPLPELQTALVMLQLMGLAEEVGGRWARR

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=133683 QR90_RS16515 WP_039686174.1 3529067..3530152(+) (dprA) [Deinococcus radiopugnans strain DY59]
GTGACCCGTGCTGCGCCCACCCCCGACACCTCCGAACTGCTGGCCCTGCTGACCCTGCGCCTGACCCCCAACCTGGGACC
GCGCCGAATTGAGGCCCTGCGGCGGCACTTCGGCAGTGCGGGGGCGGCCCTGTGTGCGCCGCTGACCAGGTTGCGCGACG
TGCCGGGGCTGGACGCCAGAAGCGTGGCCGGTCTGGGCAACGCCAAGGCGGCAGCGGAAGCTCAGGCCGAGTTGGAAAAG
GCCAGGCGGATGGGCGTGACCCTGCTGGGCCGAGGACTGGACGGTTACCCGGAGGCGCTGGAGGCCCTGGGAGATCCGCC
CCCCGTCCTGTGGGTCCTGGGCGAACTGCCGGAATTGAGCGTGGTGCCGCGCGCCGTGGGCATCGTGGGCACGCGGGCGG
CCAGCCCCCACGCGGTCAGCCTGACCCGCAAGATTTCGGGCGAGCTGGCGCGGGCAGACGTGGTGGTGGTCAGCGGCCTG
GCGCGTGGCATCGACACGGCGGCACACGGCGCGGCGGTGGAGGCCGGAGGCCACAGCATCGGCATTCTGGGCAGCGCGGT
GAACGTGATCTACCCGCGTGAAAATGGGGCGCTGGCCGGGCGCCTGACCCTGATCAGCGAGTATCCGCTGGACACCGGCC
CGGCCCAGCACCACTTTCCGACGCGCAACCGCCTGATCGCGGCCCTCTCCGCCGGAACGCTGGTGGTGGAGGGCGAGCGC
AAATCGGGCAGCCTGATCACCGCCACCCACGCGTTGGAATGCGGGCGCACGGTTTTCGCGGTGCCGGGGCGGGCGGGCGA
CCCCCGCGCCGCCGGTCCTCACGCCCTGATTCGCGACGGCGCAGTACTGACCGAATCCGCCCAGGACGTGTTGGACGAGC
TGGGCTGGGGGCAGGCACCCGCCGCACCCAGCCCGGATCTGCCTCCCGCACAGGCCCGTGCGCTGGCGGCCCTGAATGCC
CCTGCCACGCTGGACGATCTCCAGGCCACCACAGGGCTGCCCCTGCCGGAGTTGCAGACCGCCCTGGTTATGCTGCAACT
GATGGGGCTGGCGGAGGAGGTGGGCGGCCGCTGGGCGCGGCGCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(299-356)

DNA recombination-mediator protein A (DNA_processg_A)

(82-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7KJF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

74.865

100

0.767

Multiple sequence alignment