Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AMD29_RS06875 Genome accession   NZ_CP012419
Coordinates   1320435..1322174 (-) Length   579 a.a.
NCBI ID   WP_000323506.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SG-M1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1315435..1327174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD29_RS06855 (AMD29_06855) - 1316114..1316524 (-) 411 WP_000594936.1 peptide deformylase -
  AMD29_RS06860 (AMD29_06860) gdhA 1316594..1317943 (-) 1350 WP_017647818.1 NADP-specific glutamate dehydrogenase -
  AMD29_RS06865 (AMD29_06865) - 1318111..1318620 (+) 510 WP_000870955.1 HdeD family acid-resistance protein -
  AMD29_RS06870 (AMD29_06870) rcrQ 1318661..1320430 (-) 1770 WP_001227932.1 ABC transporter ATP-binding protein Regulator
  AMD29_RS06875 (AMD29_06875) rcrP 1320435..1322174 (-) 1740 WP_000323506.1 ABC transporter ATP-binding protein Regulator
  AMD29_RS06880 (AMD29_06880) - 1322241..1322714 (-) 474 WP_000586885.1 GNAT family N-acetyltransferase -
  AMD29_RS06885 (AMD29_06885) - 1322711..1324579 (-) 1869 WP_001279326.1 ABC-F family ATP-binding cassette domain-containing protein -
  AMD29_RS06890 (AMD29_06890) - 1324590..1325798 (-) 1209 WP_001238960.1 CCA tRNA nucleotidyltransferase -
  AMD29_RS06895 (AMD29_06895) - 1325983..1326831 (-) 849 WP_017647817.1 DegV family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64816.25 Da        Isoelectric Point: 6.2591

>NTDB_id=133678 AMD29_RS06875 WP_000323506.1 1320435..1322174(-) (rcrP) [Streptococcus agalactiae strain SG-M1]
MAYIWSYLKRYPNWLWLDLLGAMLFVTVILGMPTALAGMIDNGVTKGDRTGVYLWTFIMFIFVVLGIIGRITMAYASSRL
TTTMIRDMRNDMYAKLQEYSHHEYEQIGVSSLVTRMTSDTFVLMQFAEMSLRLGLVTPMVMIFSVVMILITSPSLAWLVA
VAMPLLVGVVLYVAIKTKPLSERQQTMLDKINQYVRENLTGLRVVRAFARENFQSQKFQVANQRYTDTSTGLFKLTGLTE
PLFVQIIIAMIVAIVWFALDPLQRGAIKIGDLVAFIEYSFHALFSFLLFANLFTMYPRMVVSSHRIREVMDMPISINPNA
EGVTDTKLKGHLEFDNVTFAYPGETESPVLHDISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGKILVDGVDVRD
YNLKSLRQKIGFIPQKALLFTGTIGENLKYGKADATIDDLRQAVDISQAKEFIESHQEAFETHLAEGGSNLSGGQKQRLS
IARAVVKDPDLYIFDDSFSALDYKTDATLRARLKEVTGDSTVLIVAQRVGTIMDADQIIVLDEGEIVGRGTHAQLIENNA
IYREIAESQLKNQNLSEGE

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=133678 AMD29_RS06875 WP_000323506.1 1320435..1322174(-) (rcrP) [Streptococcus agalactiae strain SG-M1]
ATGGCATATATTTGGTCTTATTTGAAAAGGTACCCCAATTGGTTATGGCTTGATTTACTAGGAGCTATGCTTTTTGTGAC
GGTTATCCTAGGAATGCCCACAGCCTTAGCGGGTATGATTGATAATGGCGTTACAAAAGGTGATCGGACTGGAGTTTATC
TGTGGACGTTCATCATGTTTATATTTGTTGTACTAGGTATTATTGGGCGTATTACGATGGCTTACGCATCTAGTCGCTTA
ACGACAACAATGATTAGAGATATGCGTAATGATATGTATGCTAAGCTTCAAGAATACTCCCATCATGAATATGAACAGAT
AGGTGTATCTTCACTAGTGACACGTATGACAAGCGATACTTTTGTTTTGATGCAATTTGCTGAAATGTCTTTACGTTTAG
GCCTAGTAACTCCTATGGTAATGATTTTTAGCGTGGTTATGATACTAATTACGAGTCCATCTTTGGCTTGGCTTGTAGCG
GTTGCGATGCCTCTTTTGGTAGGAGTCGTTTTATATGTAGCTATAAAAACAAAACCTTTATCTGAAAGACAACAGACTAT
GCTTGATAAAATCAATCAATATGTTCGTGAAAATTTAACAGGGTTACGCGTTGTTAGAGCCTTTGCAAGAGAGAATTTTC
AATCACAAAAATTTCAAGTCGCTAACCAACGTTACACAGATACTTCAACTGGTCTTTTTAAATTAACAGGGCTAACAGAA
CCACTTTTCGTTCAAATTATTATTGCAATGATTGTGGCTATCGTTTGGTTTGCTTTGGATCCCTTACAAAGAGGTGCTAT
TAAAATAGGGGATTTAGTTGCTTTTATCGAATATAGCTTCCATGCTCTCTTTTCATTTTTGCTATTTGCCAATCTTTTTA
CTATGTATCCTCGTATGGTGGTATCAAGCCATCGTATTAGAGAGGTGATGGATATGCCAATCTCTATCAATCCTAATGCC
GAAGGTGTTACGGATACGAAACTTAAAGGGCATTTAGAATTTGATAATGTAACATTCGCTTATCCAGGAGAAACAGAGAG
TCCCGTTTTGCATGATATTTCTTTTAAAGCTAAGCCTGGAGAAACAATTGCTTTTATTGGTTCAACAGGTTCAGGAAAAT
CTTCTCTTGTTAATTTGATTCCACGTTTTTATGATGTGACACTTGGAAAAATCTTAGTAGATGGAGTTGATGTAAGAGAT
TATAACCTTAAATCACTTCGCCAAAAGATTGGATTTATCCCCCAAAAAGCTCTTTTATTTACAGGGACAATAGGAGAGAA
TTTAAAATATGGAAAAGCTGATGCTACTATTGATGATCTTAGACAAGCGGTTGATATTTCTCAAGCTAAAGAGTTTATTG
AGAGTCACCAAGAAGCCTTTGAAACGCATTTAGCTGAAGGTGGGAGCAATCTTTCTGGGGGTCAAAAACAACGGTTATCT
ATTGCTAGGGCTGTTGTTAAAGATCCAGATTTATATATTTTTGATGATTCATTTTCTGCTCTCGATTATAAGACAGACGC
TACTTTAAGAGCGCGTCTAAAAGAAGTAACCGGTGATTCTACAGTTTTGATAGTTGCTCAAAGGGTGGGTACGATTATGG
ATGCTGATCAGATTATTGTCCTTGATGAAGGCGAAATTGTCGGTCGTGGTACCCACGCTCAATTAATAGAAAATAATGCT
ATTTATCGTGAAATCGCTGAGTCACAACTGAAGAACCAAAACTTATCAGAAGGAGAGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(30-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.011

94.301

0.368