Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QR90_RS02020 Genome accession   NZ_CP010028
Coordinates   415886..416518 (-) Length   210 a.a.
NCBI ID   WP_245616399.1    Uniprot ID   -
Organism   Deinococcus radiopugnans strain DY59     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410886..421518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR90_RS01995 (QR90_01995) - 411741..413243 (-) 1503 WP_039681829.1 ABC transporter permease subunit -
  QR90_RS02000 (QR90_02000) - 413240..414181 (-) 942 WP_039681832.1 DMT family transporter -
  QR90_RS02005 (QR90_02005) - 414392..414601 (+) 210 WP_039681833.1 hypothetical protein -
  QR90_RS02010 (QR90_02010) - 414736..415359 (+) 624 WP_245616398.1 SRPBCC family protein -
  QR90_RS02015 (QR90_02015) - 415463..415879 (+) 417 WP_039681835.1 methylglyoxal synthase -
  QR90_RS02020 (QR90_02020) comF 415886..416518 (-) 633 WP_245616399.1 ComF family protein Machinery gene
  QR90_RS02025 (QR90_02025) - 416515..417039 (-) 525 WP_039681837.1 hypothetical protein -
  QR90_RS02030 (QR90_02030) - 417241..417531 (+) 291 WP_245616400.1 hypothetical protein -
  QR90_RS02035 (QR90_02035) - 417721..418722 (+) 1002 WP_039681839.1 MBL fold metallo-hydrolase -
  QR90_RS02040 (QR90_02040) - 418798..419268 (+) 471 WP_039681841.1 hypothetical protein -
  QR90_RS02045 (QR90_02045) - 419356..419853 (-) 498 WP_039681843.1 YbjN domain-containing protein -
  QR90_RS02050 (QR90_02050) - 419951..421027 (+) 1077 WP_039681844.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22309.93 Da        Isoelectric Point: 11.8704

>NTDB_id=133667 QR90_RS02020 WP_245616399.1 415886..416518(-) (comF) [Deinococcus radiopugnans strain DY59]
MNARLAGWWRTLLPRACPGCGAQLGAEVGLCRACRAGLRAQVESHSPLRPRPEPHLVSLGRYRGVPRRAVRALKFGGARE
LAGVLGGALASGVPPQWNVGAVVPVPLHPARQRQRGYNQAELLAREVARQLGVPCVETLRRTRATAQQARQHAAGRNEMA
GAFAVRPGRLPPGPILLLDDVMTSGSTLIACQDALHAAGVAEVYVAVVAR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=133667 QR90_RS02020 WP_245616399.1 415886..416518(-) (comF) [Deinococcus radiopugnans strain DY59]
GTGAACGCCCGGCTGGCCGGATGGTGGCGGACCCTGCTGCCCCGCGCCTGCCCCGGCTGCGGCGCGCAATTGGGCGCCGA
GGTGGGCCTGTGCCGCGCGTGCCGCGCCGGATTGCGCGCGCAGGTGGAATCCCACAGTCCACTGCGCCCCCGTCCGGAGC
CGCATCTGGTGAGCCTGGGCCGTTACCGGGGCGTGCCGCGCCGGGCCGTCCGCGCCCTGAAATTTGGCGGGGCGCGTGAG
CTGGCCGGCGTGCTGGGCGGGGCGCTGGCGTCAGGTGTGCCGCCGCAGTGGAACGTGGGCGCGGTGGTGCCGGTGCCGCT
GCATCCGGCCCGGCAGCGCCAGCGCGGTTACAACCAGGCAGAACTGCTGGCCCGTGAGGTGGCCCGTCAACTGGGCGTGC
CGTGTGTGGAGACGCTGCGCCGGACCCGTGCCACAGCTCAGCAGGCTCGGCAGCACGCCGCAGGGCGCAACGAGATGGCC
GGGGCCTTTGCGGTCAGGCCGGGCCGATTGCCCCCTGGACCCATCCTGCTGCTCGACGACGTGATGACATCTGGAAGCAC
CCTTATCGCCTGCCAGGACGCCCTGCACGCGGCAGGCGTTGCAGAGGTCTACGTCGCGGTGGTGGCCCGCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(120-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

67.15

98.571

0.662

Multiple sequence alignment