Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QR90_RS00685 Genome accession   NZ_CP010028
Coordinates   143887..144507 (+) Length   206 a.a.
NCBI ID   WP_039681607.1    Uniprot ID   A0A0A7KCV7
Organism   Deinococcus radiopugnans strain DY59     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 138887..149507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR90_RS00650 (QR90_00650) - 139195..139566 (-) 372 WP_039681600.1 P-II family nitrogen regulator -
  QR90_RS00655 (QR90_00655) - 139851..140411 (-) 561 WP_039681601.1 DUF4126 domain-containing protein -
  QR90_RS00660 (QR90_00660) rpmI 140634..140840 (+) 207 WP_039681602.1 50S ribosomal protein L35 -
  QR90_RS00665 (QR90_00665) rplT 140840..141208 (+) 369 WP_039681603.1 50S ribosomal protein L20 -
  QR90_RS00670 (QR90_00670) - 141451..142143 (-) 693 WP_039681604.1 GntR family transcriptional regulator -
  QR90_RS00675 (QR90_00675) moaA 142371..143384 (-) 1014 WP_081994758.1 GTP 3',8-cyclase MoaA -
  QR90_RS00680 (QR90_00680) - 143487..143777 (+) 291 WP_039681606.1 YbaB/EbfC family nucleoid-associated protein -
  QR90_RS00685 (QR90_00685) recR 143887..144507 (+) 621 WP_039681607.1 recombination mediator RecR Machinery gene
  QR90_RS00690 (QR90_00690) - 144583..145188 (+) 606 WP_039681608.1 DedA family protein -
  QR90_RS00695 (QR90_00695) - 145321..146067 (+) 747 WP_039681609.1 endonuclease III domain-containing protein -
  QR90_RS00700 (QR90_00700) - 146064..147110 (+) 1047 WP_039681610.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QR90_RS00705 (QR90_00705) - 147107..147706 (+) 600 WP_245616375.1 GNAT family N-acetyltransferase -
  QR90_RS00710 (QR90_00710) - 147712..148635 (+) 924 WP_039681611.1 NAD(P)-dependent oxidoreductase -
  QR90_RS00715 (QR90_00715) - 148860..149468 (-) 609 WP_039681612.1 site-2 protease family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22336.69 Da        Isoelectric Point: 5.0832

>NTDB_id=133666 QR90_RS00685 WP_039681607.1 143887..144507(+) (recR) [Deinococcus radiopugnans strain DY59]
MKYPPSLVSLIRELSRLPGIGPKSAQRLAFYLFEQPREDIERLAGSLLSAKRDLHSCPVCFNITDAEVCDVCSDPARDQA
LICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPEQLHIKPLLPRVTEGQEVILATGTTVEGDATALYLQRLLEP
LGATVSRIAYGLPVGGALEYADEVTLGRAMAGRQQVSKPRPPQVPD

Nucleotide


Download         Length: 621 bp        

>NTDB_id=133666 QR90_RS00685 WP_039681607.1 143887..144507(+) (recR) [Deinococcus radiopugnans strain DY59]
ATGAAGTACCCCCCTTCCCTCGTCTCCCTGATCCGTGAGCTGTCGCGTTTGCCGGGCATCGGCCCCAAGAGCGCGCAGCG
GCTGGCCTTTTACCTGTTCGAGCAACCGCGCGAGGACATCGAGCGGCTGGCGGGTTCGCTGCTGTCGGCCAAGCGCGATC
TGCACAGCTGCCCGGTGTGCTTCAACATCACCGATGCCGAGGTCTGCGACGTGTGCAGCGATCCGGCCCGCGATCAGGCG
CTGATCTGCGTGGTGGAGGAACCCGGCGACGTGATTGCCATCGAGCGCAGCGGCGAGTACCGCGGCCTGTACCACGTCCT
GCACGGCGTCCTGAGTCCCATGAACGGCGTGGGTCCCGAGCAGTTGCACATCAAGCCCCTGCTGCCGCGCGTGACGGAGG
GGCAGGAGGTCATTCTGGCCACCGGCACCACCGTGGAGGGCGACGCCACCGCGCTGTACCTGCAGCGTCTGCTGGAGCCG
CTGGGCGCCACCGTCAGCCGCATCGCCTACGGGTTGCCGGTGGGGGGCGCGCTGGAATACGCCGACGAGGTCACGCTGGG
CCGCGCCATGGCCGGACGCCAGCAGGTCAGCAAGCCCCGGCCCCCGCAAGTTCCGGACTGA

Domains

Predicted by InterproScan.

Toprim domain (Toprim_4)

(82-169)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7KCV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

86.829

99.515

0.864

Multiple sequence alignment