Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   AMD29_RS01310 Genome accession   NZ_CP012419
Coordinates   216448..216747 (+) Length   99 a.a.
NCBI ID   WP_000234804.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SG-M1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 211448..221747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD29_RS01285 (AMD29_01285) - 213316..213681 (+) 366 WP_000285373.1 DUF1033 family protein -
  AMD29_RS01290 (AMD29_01290) comGA 213854..214825 (+) 972 WP_000250805.1 competence type IV pilus ATPase ComGA Machinery gene
  AMD29_RS01295 (AMD29_01295) comGB 214719..215762 (+) 1044 WP_223295889.1 competence type IV pilus assembly protein ComGB Machinery gene
  AMD29_RS01300 (AMD29_01300) comGC/cglC 215759..216088 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  AMD29_RS01305 (AMD29_01305) comGD 216063..216476 (+) 414 WP_000244261.1 competence type IV pilus minor pilin ComGD Machinery gene
  AMD29_RS01310 (AMD29_01310) comGE 216448..216747 (+) 300 WP_000234804.1 competence type IV pilus minor pilin ComGE Machinery gene
  AMD29_RS01315 (AMD29_01315) comGF 216701..217162 (+) 462 WP_001874812.1 competence type IV pilus minor pilin ComGF Machinery gene
  AMD29_RS01320 (AMD29_01320) comGG 217140..217511 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG Machinery gene
  AMD29_RS01325 (AMD29_01325) comGH 217626..218600 (+) 975 WP_001008574.1 class I SAM-dependent methyltransferase Machinery gene
  AMD29_RS01330 (AMD29_01330) - 218632..219825 (+) 1194 WP_000047534.1 acetate kinase -
  AMD29_RS01335 (AMD29_01335) - 219977..220183 (+) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  AMD29_RS11805 - 220251..220379 (+) 129 WP_014959723.1 hypothetical protein -
  AMD29_RS01340 (AMD29_01340) - 220420..220875 (+) 456 WP_000905673.1 hypothetical protein -
  AMD29_RS01345 (AMD29_01345) - 220944..221609 (+) 666 WP_000008113.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11377.53 Da        Isoelectric Point: 10.6093

>NTDB_id=133617 AMD29_RS01310 WP_000234804.1 216448..216747(+) (comGE) [Streptococcus agalactiae strain SG-M1]
MVIIVRKKIRAYILLESLVGLAILVTITRLVISEINRQQSHIARRQHEQEVLILARMAVQTDQKILEANGVNIRIEESKN
KIVLFEDNKEILHVSKVKG

Nucleotide


Download         Length: 300 bp        

>NTDB_id=133617 AMD29_RS01310 WP_000234804.1 216448..216747(+) (comGE) [Streptococcus agalactiae strain SG-M1]
GTGGTAATTATCGTAAGAAAGAAAATTAGAGCCTATATTTTACTGGAAAGCCTAGTGGGATTAGCTATTTTAGTTACTAT
TACAAGATTAGTAATAAGTGAAATAAATCGTCAACAATCCCATATTGCAAGAAGGCAACATGAGCAAGAAGTATTGATAT
TAGCTAGAATGGCTGTGCAAACTGATCAAAAAATATTAGAAGCAAATGGTGTTAATATTCGTATTGAAGAAAGTAAAAAT
AAAATTGTGCTCTTTGAAGATAATAAGGAAATTTTGCACGTATCAAAAGTTAAGGGTTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

39.583

96.97

0.384
  comGE Streptococcus mutans UA159

39.583

96.97

0.384