Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QF06_RS07110 Genome accession   NZ_CP010014
Coordinates   1429668..1430447 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. YP1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1424668..1435447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF06_RS07090 (QF06_07090) trmFO 1425361..1426668 (+) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QF06_RS07095 (QF06_07095) xerC 1426736..1427650 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  QF06_RS07100 (QF06_07100) clpQ 1427663..1428208 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  QF06_RS07105 (QF06_07105) hslU 1428225..1429628 (+) 1404 WP_041850833.1 HslU--HslV peptidase ATPase subunit -
  QF06_RS07110 (QF06_07110) codY 1429668..1430447 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QF06_RS07115 (QF06_07115) flgB 1430827..1431216 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  QF06_RS07120 (QF06_07120) flgC 1431216..1431668 (+) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  QF06_RS07125 (QF06_07125) fliE 1431679..1431999 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  QF06_RS07130 (QF06_07130) fliF 1432045..1433655 (+) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  QF06_RS07135 (QF06_07135) fliG 1433668..1434684 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  QF06_RS07140 (QF06_07140) fliH 1434677..1435429 (+) 753 WP_032725764.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=133554 QF06_RS07110 WP_003220850.1 1429668..1430447(+) (codY) [Bacillus sp. YP1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=133554 QF06_RS07110 WP_003220850.1 1429668..1430447(+) (codY) [Bacillus sp. YP1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment