Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DE8555_RS05965 Genome accession   NZ_CP012393
Coordinates   1111181..1111798 (-) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE8555     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1106181..1116798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8555_RS05945 (DE8555_1110) recD 1106894..1108639 (-) 1746 WP_063399709.1 exodeoxyribonuclease V subunit alpha Machinery gene
  DE8555_RS05950 (DE8555_1111) lolD 1108707..1109402 (-) 696 WP_002220970.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  DE8555_RS05955 (DE8555_1112) - 1109395..1110642 (-) 1248 WP_002248056.1 lipoprotein-releasing ABC transporter permease subunit -
  DE8555_RS05960 (DE8555_1113) - 1110847..1111125 (+) 279 WP_002213502.1 hypothetical protein -
  DE8555_RS05965 (DE8555_1114) recR 1111181..1111798 (-) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  DE8555_RS05970 (DE8555_1115) - 1111865..1113403 (-) 1539 WP_002220964.1 SurA N-terminal domain-containing protein -
  DE8555_RS05975 (DE8555_1116) - 1113458..1113832 (-) 375 WP_002220962.1 arsenate reductase -
  DE8555_RS05980 (DE8555_1117) - 1113982..1115610 (+) 1629 WP_002224512.1 ABC-F family ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=133498 DE8555_RS05965 WP_002217147.1 1111181..1111798(-) (recR) [Neisseria meningitidis strain DE8555]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=133498 DE8555_RS05965 WP_002217147.1 1111181..1111798(-) (recR) [Neisseria meningitidis strain DE8555]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATTCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366