Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FORC9_RS13745 Genome accession   NZ_CP009984
Coordinates   2993362..2994072 (+) Length   236 a.a.
NCBI ID   WP_060532755.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_009     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2988362..2999072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC9_RS13725 (FORC9_2683) greB 2988773..2989255 (-) 483 WP_013572566.1 transcription elongation factor GreB -
  FORC9_RS13730 (FORC9_2684) - 2989491..2991815 (+) 2325 WP_060532752.1 Tex family protein -
  FORC9_RS13735 (FORC9_2685) - 2991898..2992368 (-) 471 WP_011078928.1 hypothetical protein -
  FORC9_RS13740 (FORC9_2686) bioH 2992506..2993273 (-) 768 WP_060532754.1 pimeloyl-ACP methyl ester esterase BioH -
  FORC9_RS13745 (FORC9_2687) comF 2993362..2994072 (+) 711 WP_060532755.1 ComF family protein Machinery gene
  FORC9_RS13750 (FORC9_2688) nfuA 2994203..2994787 (+) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  FORC9_RS13755 (FORC9_2689) nudE 2994903..2995457 (+) 555 WP_013572571.1 ADP compounds hydrolase NudE -
  FORC9_RS13760 (FORC9_2690) cysQ 2995472..2996299 (+) 828 WP_045623813.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FORC9_RS13765 (FORC9_2691) - 2996426..2997187 (-) 762 WP_060532757.1 type II secretion system protein N -
  FORC9_RS13770 (FORC9_2692) - 2997189..2997680 (-) 492 WP_011078935.1 type II secretion system protein M -
  FORC9_RS13775 (FORC9_2693) gspL 2997688..2998887 (-) 1200 WP_043920924.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27226.96 Da        Isoelectric Point: 9.9832

>NTDB_id=133480 FORC9_RS13745 WP_060532755.1 2993362..2994072(+) (comF) [Vibrio vulnificus strain FORC_009]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCKHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQKLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDRPASLLLSVPMHWRRQWQRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=133480 FORC9_RS13745 WP_060532755.1 2993362..2994072(+) (comF) [Vibrio vulnificus strain FORC_009]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCATCACCCGCTTTGGTGCAAGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAGTGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAAGCTCTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAATTCTGGTACTGCGCCAGCTTGGCACCTTTGCT
CATCCAACGCATTGACCGCCCCGCGTCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGCAGCGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCGAGGAGATTAAATCGCCCCTTCCTTGCCCACGCTTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAACTTAGCGGGTGCTTTTCGCCTCAATCGCTCGGC
TCTGCCCCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGTAGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.838

99.153

0.564
  comF Vibrio campbellii strain DS40M4

45.833

100

0.466

Multiple sequence alignment