Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   DE8555_RS02635 Genome accession   NZ_CP012393
Coordinates   517342..519531 (+) Length   729 a.a.
NCBI ID   WP_063399768.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE8555     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512342..524531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8555_RS02620 (DE8555_0478) - 512925..514103 (+) 1179 WP_002239820.1 MacA family efflux pump subunit -
  DE8555_RS02625 (DE8555_0479) - 514169..516103 (+) 1935 WP_002240344.1 MacB family efflux pump subunit -
  DE8555_RS02630 (DE8555_0480) - 516421..517203 (-) 783 WP_002214390.1 DsbC family protein -
  DE8555_RS02635 (DE8555_0481) priA 517342..519531 (+) 2190 WP_063399768.1 primosomal protein N' Machinery gene
  DE8555_RS02640 (DE8555_0482) - 519578..520651 (-) 1074 WP_002221372.1 NnrS family protein -
  DE8555_RS02645 (DE8555_0483) - 520699..521655 (-) 957 WP_002247793.1 IS110-like element ISNme5 family transposase -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 81071.68 Da        Isoelectric Point: 7.7474

>NTDB_id=133480 DE8555_RS02635 WP_063399768.1 517342..519531(+) (priA) [Neisseria meningitidis strain DE8555]
MIYHRIAVNVPLSDGLLTYSHSDPLPQGTRVLVPFRNKTVVGMVWETDIAPDMDTARILSVQTAFSDEPPLPESWRDLLA
FTSRYYHYPTGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGEMTMAALKQVNAQA
VKLIENWAEQGWIETTEAAKPVLRSYHGQASHSEFVLNANQRQASDAIQTALGRFRPFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLHSRMAAGRRTQDYLRAMSGQAKLVIGTRLAVFTPMDDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQGGCPVVLGSATPSLESWHKAQSGAYRLLQLTERAHAAAQLPQVEILNAGRLKLD
NGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHRESIPFKCPDCG
NQDLTAVGHGTQRVEETLRAFLPKAAVVRVDRDSTAHKNDWADLYRRIADNEIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADAMEFLNAAKETLAPLLPESVSQFGAAPMLMVRLAERERAQIFLESTSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=133480 DE8555_RS02635 WP_063399768.1 517342..519531(+) (priA) [Neisseria meningitidis strain DE8555]
ATGATCTACCACCGCATCGCCGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCCCATTCCGATCCGCTGCCGCA
GGGCACGCGGGTGCTTGTGCCTTTCCGCAATAAAACCGTGGTCGGGATGGTGTGGGAAACGGATATTGCGCCCGATATGG
ATACGGCGCGGATTTTGAGCGTTCAGACGGCCTTTTCGGACGAGCCGCCGCTGCCCGAAAGCTGGCGTGATTTGTTGGCG
TTTACGTCGCGTTATTACCACTATCCGACGGGGCAGGCAGTATTTGCCGCACTGCCGCAGGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCATTGTTTTATGCTTTAAACGAAGCAGGCAGGGCGCAAACGCCGCCGCCGGCGCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGAAATGACGATGGCAGCGTTGAAGCAGGTAAACGCGCAGGCG
GTGAAATTAATCGAAAATTGGGCGGAACAGGGTTGGATTGAAACGACGGAAGCGGCGAAACCCGTTTTAAGGTCGTACCA
CGGGCAGGCTTCGCACTCTGAATTTGTGTTGAATGCCAACCAACGGCAGGCTTCCGATGCCATTCAGACGGCATTGGGAC
GCTTCCGGCCGTTTCTGCTGTACGGCATCACCGGCAGCGGCAAGACCGAAGTGTATTTCGATGCGATGGCGAAAGTGTTG
GCTCAGGGGCGGCAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTGAAGCGGGTGGAAAACCGTTT
TGCCGACGTGCCGACCGCCGTGTTGCACAGCCGGATGGCGGCAGGCAGGCGAACGCAGGATTATCTGCGCGCGATGTCGG
GGCAGGCGAAGCTGGTGATCGGCACGCGGCTGGCGGTGTTCACGCCGATGGATGATGTCGGGCTGATTGTGGTCGATGAG
GAACACGACGGCTCGTTCAAACAGGACAACGAATTGCGCTACCACGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGGG
CGGCTGTCCCGTCGTGTTGGGCAGCGCGACCCCAAGCTTGGAAAGCTGGCACAAGGCACAAAGCGGCGCGTACCGCCTCT
TGCAACTGACCGAACGCGCCCATGCCGCCGCGCAACTGCCGCAAGTAGAAATCCTCAACGCAGGCCGTCTGAAACTCGAC
AACGGTTTCTCGCCGCAAGCCTTGCAGCTTCTGAAACAGAATTTTGAAGCAGGCGGTATGTCGCTGGTGTACCTCAACCG
GCGCGGCTTTGCGCCCGCGCTGTTTTGCGGCGACTGCGGCCATACCTTCGGCTGCCCGAACTGCTCCGCCAAAATGGTGT
TGCACCAACGCGCCCGCCAACTGCGCTGCCACCACTGCGACCACCGCGAATCCATCCCGTTCAAATGCCCCGACTGCGGC
AACCAAGACCTGACCGCCGTCGGCCACGGCACGCAGCGCGTCGAAGAAACCCTGCGCGCCTTCCTGCCCAAGGCAGCCGT
CGTCCGTGTTGACAGGGACAGCACCGCGCACAAAAACGACTGGGCGGATTTGTACCGCCGCATTGCCGACAACGAAATCG
ACATTCTGGTCGGCACGCAGATGCTCGCCAAAGGGCATGATTTCGCGCGGCTCAACCTCGTTATCGTGTTGAACGCCGAC
GGCAGCCTGTACAGCGCGGACTTTCGCGCCCCGGAAAGGCTGTTCGCCGAGCTGATGCAGGTGTCCGGCAGGGCGGGGCG
CGCCGACAAACCCGGCAAGGTGTTGATACAGACCCAACTGCCCGAACATCCCGTCTTCGCCGCCGTCAAAGCGCAGGATT
ATGCCGTGTTCGCCGAAAACGAATTGAACGAGCGGCAAATGTTCGCGATGCCGCCCTTCGGTTTCCAGACCGCCGTCCGC
GCCGATGCGCCGCGTGTTGCCGATGCGATGGAATTTCTCAACGCCGCCAAAGAAACCCTCGCCCCGCTGTTGCCCGAAAG
CGTTTCCCAGTTTGGCGCGGCTCCGATGCTGATGGTGCGCCTTGCCGAACGCGAACGCGCGCAAATCTTCCTCGAATCAA
CATCCCGACAAGATTTGCACCGAGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAAAACAGGGACGGCAAAATCCGATGG
TCGGTGGATGTCGATCCGCAGGAGGCTTGA

Domains

Predicted by InterProScan.

Primosomal protein N C-terminal domain (PriA_C)

(632-726)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

Helicase conserved C-terminal domain (Helicase_C)

(516-588)

DEAD/DEAH box helicase (DEAD)

(206-361)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

35.973

100

0.368

Multiple sequence alignment