Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FORC8_RS14290 Genome accession   NZ_CP009982
Coordinates   3085752..3086477 (+) Length   241 a.a.
NCBI ID   WP_053047780.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_008     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3080752..3091477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC8_RS14275 (FORC8_2741) - 3081855..3084176 (+) 2322 WP_029834186.1 Tex family protein -
  FORC8_RS14280 (FORC8_2742) - 3084312..3084776 (-) 465 WP_005459035.1 hypothetical protein -
  FORC8_RS14285 (FORC8_2743) bioH 3084900..3085667 (-) 768 WP_029786485.1 pimeloyl-ACP methyl ester esterase BioH -
  FORC8_RS14290 (FORC8_2744) comF 3085752..3086477 (+) 726 WP_053047780.1 amidophosphoribosyltransferase Machinery gene
  FORC8_RS14295 (FORC8_2745) nfuA 3086575..3087159 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  FORC8_RS14300 (FORC8_2746) nudE 3087380..3087949 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  FORC8_RS14305 (FORC8_2747) cysQ 3087990..3088817 (+) 828 WP_017449059.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FORC8_RS14310 (FORC8_2748) - 3089103..3089864 (-) 762 WP_042772205.1 type II secretion system protein N -
  FORC8_RS14315 (FORC8_2749) - 3089866..3090357 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27664.78 Da        Isoelectric Point: 8.8468

>NTDB_id=133434 FORC8_RS14290 WP_053047780.1 3085752..3086477(+) (comF) [Vibrio parahaemolyticus strain FORC_008]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDNCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVHALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=133434 FORC8_RS14290 WP_053047780.1 3085752..3086477(+) (comF) [Vibrio parahaemolyticus strain FORC_008]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATAACTGTTATCAATACCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTAGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477

Multiple sequence alignment