Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | BF25_RS06085 | Genome accession | NZ_CP009981 |
| Coordinates | 847573..848352 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus anthracis strain Ames isolate BACI008 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 808751..882674 | 847573..848352 | within | 0 |
Gene organization within MGE regions
Location: 808751..882674
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BF25_RS05895 (BF25_905) | rsmB | 808909..810243 (+) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| BF25_RS05900 (BF25_906) | rlmN | 810248..811336 (+) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| BF25_RS05905 (BF25_907) | - | 811341..812093 (+) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| BF25_RS05910 (BF25_908) | prkC | 812102..814075 (+) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| BF25_RS05915 (BF25_909) | rsgA | 814344..815225 (+) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| BF25_RS05920 (BF25_910) | rpe | 815228..815872 (+) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| BF25_RS05925 (BF25_911) | - | 815972..816652 (+) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| BF25_RS05930 | spoVM | 816719..816799 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| BF25_RS05935 (BF25_912) | rpmB | 816872..817060 (-) | 189 | WP_000124778.1 | 50S ribosomal protein L28 | - |
| BF25_RS05940 (BF25_913) | - | 817439..817801 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| BF25_RS05945 (BF25_914) | - | 817824..819500 (+) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| BF25_RS05950 (BF25_915) | recG | 819790..821838 (+) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| BF25_RS05955 (BF25_916) | fapR | 821927..822520 (+) | 594 | WP_000747352.1 | transcription factor FapR | - |
| BF25_RS05960 (BF25_917) | plsX | 822517..823509 (+) | 993 | WP_000684111.1 | phosphate acyltransferase PlsX | - |
| BF25_RS05965 (BF25_918) | fabD | 823524..824468 (+) | 945 | WP_000516958.1 | ACP S-malonyltransferase | - |
| BF25_RS05970 (BF25_919) | fabG | 824468..825208 (+) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| BF25_RS05975 (BF25_920) | acpP | 825278..825511 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| BF25_RS05980 (BF25_921) | rncS | 825570..826307 (+) | 738 | WP_001146873.1 | ribonuclease III | - |
| BF25_RS05985 (BF25_922) | smc | 826454..830023 (+) | 3570 | WP_000478985.1 | chromosome segregation protein SMC | - |
| BF25_RS05990 (BF25_923) | ftsY | 830039..831028 (+) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| BF25_RS05995 (BF25_924) | - | 831161..831493 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| BF25_RS06000 (BF25_925) | ffh | 831506..832855 (+) | 1350 | WP_000863456.1 | signal recognition particle protein | - |
| BF25_RS06005 (BF25_926) | rpsP | 832956..833228 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| BF25_RS06010 (BF25_927) | - | 833243..833470 (+) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| BF25_RS06015 (BF25_928) | rimM | 833591..834106 (+) | 516 | WP_000170269.1 | ribosome maturation factor RimM | - |
| BF25_RS06020 (BF25_929) | trmD | 834106..834840 (+) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BF25_RS06025 (BF25_930) | rplS | 834987..835331 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| BF25_RS06030 (BF25_931) | lepB | 835433..835984 (+) | 552 | WP_000711857.1 | signal peptidase I | - |
| BF25_RS06035 (BF25_932) | ylqF | 836005..836895 (+) | 891 | WP_000236707.1 | ribosome biogenesis GTPase YlqF | - |
| BF25_RS06040 (BF25_933) | rnhB | 836947..837720 (+) | 774 | WP_001174712.1 | ribonuclease HII | - |
| BF25_RS06045 (BF25_934) | sucC | 837914..839074 (+) | 1161 | WP_001020786.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| BF25_RS06050 (BF25_935) | sucD | 839095..839997 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| BF25_RS06055 (BF25_936) | dprA | 840319..840953 (+) | 635 | Protein_927 | DNA-processing protein DprA | - |
| BF25_RS06060 (BF25_937) | topA | 841098..843176 (+) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| BF25_RS06065 (BF25_938) | trmFO | 843227..844531 (+) | 1305 | WP_003161605.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| BF25_RS06070 (BF25_939) | xerC | 844597..845496 (+) | 900 | WP_001101226.1 | tyrosine recombinase XerC | - |
| BF25_RS06075 (BF25_940) | hslV | 845539..846081 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| BF25_RS06080 (BF25_941) | hslU | 846104..847495 (+) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| BF25_RS06085 (BF25_942) | codY | 847573..848352 (+) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| BF25_RS06090 (BF25_943) | rpsB | 848702..849403 (+) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| BF25_RS06095 (BF25_944) | tsf | 849507..850394 (+) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| BF25_RS06100 (BF25_945) | pyrH | 850461..851183 (+) | 723 | WP_000042663.1 | UMP kinase | - |
| BF25_RS06105 (BF25_946) | frr | 851186..851743 (+) | 558 | WP_000531498.1 | ribosome recycling factor | - |
| BF25_RS06110 (BF25_947) | uppS | 851829..852605 (+) | 777 | WP_000971303.1 | isoprenyl transferase | - |
| BF25_RS06115 (BF25_948) | cdsA | 852623..853414 (+) | 792 | WP_000813581.1 | phosphatidate cytidylyltransferase | - |
| BF25_RS06120 (BF25_949) | dxr | 853438..854580 (+) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| BF25_RS06125 (BF25_950) | rseP | 854597..855853 (+) | 1257 | WP_001090228.1 | RIP metalloprotease RseP | - |
| BF25_RS06130 (BF25_951) | - | 855963..857663 (+) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| BF25_RS06135 (BF25_952) | - | 857788..862089 (+) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| BF25_RS06140 (BF25_953) | rimP | 862422..862892 (+) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| BF25_RS06145 (BF25_954) | nusA | 862910..864016 (+) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| BF25_RS06150 (BF25_955) | rnpM | 864028..864300 (+) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| BF25_RS06155 (BF25_956) | - | 864301..864612 (+) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| BF25_RS06160 (BF25_957) | infB | 864617..866677 (+) | 2061 | WP_000036339.1 | translation initiation factor IF-2 | - |
| BF25_RS06165 (BF25_958) | - | 866674..866955 (+) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| BF25_RS06170 (BF25_959) | rbfA | 866971..867327 (+) | 357 | WP_000776446.1 | 30S ribosome-binding factor RbfA | - |
| BF25_RS06175 (BF25_960) | truB | 867414..868337 (+) | 924 | WP_000399357.1 | tRNA pseudouridine(55) synthase TruB | - |
| BF25_RS06180 (BF25_961) | ribF | 868381..869352 (+) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| BF25_RS06185 (BF25_962) | rpsO | 869453..869722 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| BF25_RS06190 (BF25_963) | pnp | 869883..872021 (+) | 2139 | WP_000076733.1 | polyribonucleotide nucleotidyltransferase | - |
| BF25_RS06195 (BF25_964) | - | 872173..873072 (+) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| BF25_RS06200 (BF25_965) | - | 873159..874400 (+) | 1242 | WP_000592993.1 | M16 family metallopeptidase | - |
| BF25_RS06205 (BF25_966) | - | 874527..874778 (+) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| BF25_RS06210 (BF25_967) | dpaA | 875053..875955 (+) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| BF25_RS06215 (BF25_968) | dpaB | 875952..876551 (+) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| BF25_RS06220 (BF25_969) | asd | 876702..877748 (+) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| BF25_RS06225 (BF25_970) | dapG | 877772..879004 (+) | 1233 | WP_000692470.1 | aspartate kinase | - |
| BF25_RS06230 (BF25_971) | dapA | 879016..879894 (+) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| BF25_RS06240 (BF25_972) | - | 880660..882330 (+) | 1671 | WP_000823085.1 | ribonuclease J | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=133366 BF25_RS06085 WP_000421288.1 847573..848352(+) (codY) [Bacillus anthracis strain Ames isolate BACI008]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=133366 BF25_RS06085 WP_000421288.1 847573..848352(+) (codY) [Bacillus anthracis strain Ames isolate BACI008]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |