Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PN96_RS12800 Genome accession   NZ_CP009977
Coordinates   2761271..2761993 (+) Length   240 a.a.
NCBI ID   WP_024372766.1    Uniprot ID   A0AAN1CUN6
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2756271..2766993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PN96_RS12785 (PN96_12615) - 2757430..2759760 (+) 2331 WP_020335701.1 Tex family protein -
  PN96_RS12790 (PN96_12620) - 2759843..2760307 (-) 465 WP_020335700.1 hypothetical protein -
  PN96_RS12795 (PN96_12625) bioH 2760419..2761186 (-) 768 WP_024372767.1 pimeloyl-ACP methyl ester esterase BioH -
  PN96_RS12800 (PN96_12630) comF 2761271..2761993 (+) 723 WP_024372766.1 ComF family protein Machinery gene
  PN96_RS12805 (PN96_12635) nfuA 2762090..2762674 (+) 585 WP_014230546.1 Fe-S biogenesis protein NfuA -
  PN96_RS12810 (PN96_12640) nudE 2762835..2763404 (+) 570 WP_020335697.1 ADP compounds hydrolase NudE -
  PN96_RS12815 (PN96_12645) cysQ 2763449..2764276 (+) 828 WP_020335696.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PN96_RS12820 (PN96_12650) - 2764561..2765322 (-) 762 WP_024372765.1 type II secretion system protein N -
  PN96_RS12825 (PN96_12655) - 2765324..2765815 (-) 492 WP_020335694.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27529.72 Da        Isoelectric Point: 9.2040

>NTDB_id=133338 PN96_RS12800 WP_024372766.1 2761271..2761993(+) (comF) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MLSHHWQNIMRRVLGSQCGLCRLPLKTAQSPNALRWCSHCFQYLNPIRRCQHCGLAMQETERSDTVCGECLAEPPPWQRL
ITLGDYAFPLSREVQRFKDHGESWHVEALTQLLAARISSPATLITSVPLHWRRYLSRGFNQSDVLARHLAAHLHRHFDPK
VFRRIQYANSQRGHTKTQREQNLQGAFTLNKKPIYKHVAIVDDVVTTGSTVRQLCQLLLEVGVESIDIYCICRTPAPTSL

Nucleotide


Download         Length: 723 bp        

>NTDB_id=133338 PN96_RS12800 WP_024372766.1 2761271..2761993(+) (comF) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGTTATCTCATCACTGGCAAAACATCATGCGTCGCGTGCTCGGTAGTCAATGTGGTTTGTGCAGGCTGCCACTGAAAAC
AGCACAATCACCGAACGCTCTTCGTTGGTGTAGCCATTGTTTTCAGTATCTTAATCCGATTAGAAGGTGCCAACATTGTG
GTTTGGCTATGCAGGAAACAGAAAGGAGCGACACGGTGTGTGGCGAGTGCTTGGCCGAACCACCGCCCTGGCAGCGACTC
ATCACTCTCGGAGACTATGCGTTTCCTCTGTCACGCGAGGTTCAACGCTTTAAAGATCATGGCGAGAGTTGGCACGTAGA
AGCATTAACGCAATTGCTCGCGGCACGTATTTCTTCTCCAGCGACACTGATTACCAGCGTTCCACTGCACTGGCGACGCT
ATTTATCGCGTGGATTCAATCAAAGTGATGTACTTGCCAGACACTTGGCAGCCCATCTGCATCGCCATTTTGACCCTAAA
GTATTTCGTCGTATCCAATACGCAAACTCTCAGAGAGGCCATACTAAAACCCAACGAGAGCAAAACTTGCAAGGTGCGTT
TACCCTCAATAAAAAGCCGATTTATAAACACGTGGCGATTGTCGATGATGTCGTCACAACGGGCAGTACGGTACGACAAT
TATGCCAATTACTACTTGAAGTTGGTGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTACTTCGCTC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

68.88

100

0.692
  comF Vibrio cholerae strain A1552

51.055

98.75

0.504

Multiple sequence alignment