Detailed information    

experimental Experimentally validated

Overview

Name   RA0C_RS08490   Type   Unclear
Locus tag   RA0C_RS08490 Genome accession   NC_017045
Coordinates   1784266..1785003 (-) Length   245 a.a.
NCBI ID   WP_004916708.1    Uniprot ID   E4TCY7
Organism   Riemerella anatipestifer ATCC 11845 = DSM 15868     
Function   require for natural transformation   
Unclear

Function

RA0C_RS09855, RA0C_RS09870, RA0C_RS09875, RA0C_RS09880, RA0C_RS03780, RA0C_RS07335, RA0C_RS08100, RA0C_RS04070, RA0C_RS07455, RA0C_RS05975, RA0C_RS06070, and RA0C_RS08490 significantly affected the natural transformation frequency of RA.


Genomic Context

Location: 1779266..1790003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA0C_RS08460 (RA0C_1764) rpsI 1779290..1779676 (-) 387 WP_004916691.1 30S ribosomal protein S9 -
  RA0C_RS08465 (RA0C_1765) rplM 1779680..1780135 (-) 456 WP_004916694.1 50S ribosomal protein L13 -
  RA0C_RS08470 (RA0C_1766) - 1780333..1780659 (-) 327 WP_004916697.1 SUF system Fe-S cluster assembly protein -
  RA0C_RS08475 (RA0C_1767) - 1780679..1781377 (-) 699 WP_004916700.1 3'-5' exonuclease -
  RA0C_RS08480 (RA0C_1768) - 1781381..1782784 (-) 1404 WP_004916703.1 nucleoside recognition domain-containing protein -
  RA0C_RS08485 (RA0C_1769) - 1782945..1784255 (+) 1311 WP_004916706.1 UDP-glucose dehydrogenase family protein -
  RA0C_RS08490 (RA0C_1770) RA0C_RS08490 1784266..1785003 (-) 738 WP_004916708.1 sulfite exporter TauE/SafE family protein Unclear
  RA0C_RS08495 (RA0C_1771) - 1784994..1785452 (-) 459 WP_004916711.1 FixH family protein -
  RA0C_RS08500 (RA0C_1772) ccoG 1785453..1786895 (-) 1443 WP_004916714.1 cytochrome c oxidase accessory protein CcoG -
  RA0C_RS08505 (RA0C_1773) - 1786923..1787801 (-) 879 WP_004916717.1 c-type cytochrome -
  RA0C_RS08510 (RA0C_1774) - 1787808..1788002 (-) 195 WP_004916719.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 26459.03 Da        Isoelectric Point: 10.2545

>NTDB_id=1332 RA0C_RS08490 WP_004916708.1 1784266..1785003(-) (RA0C_RS08490) [Riemerella anatipestifer ATCC 11845 = DSM 15868]
MEITLIIAALTLGFTTGLHCIGMCGPIALSLGLSRKKQVNFHLQNITYQLGRIFTYSILGILLGLIGEGFQLAGVQGWLT
IFAGIILIIMALFSFGNGDFASKIPFLSKFLLKIKLNLGKLLSKTDYSSRFLTGVLNGFLPCGMVYVALAASLAAGGAIQ
GGLFMMLFGLGTFPFMFITVLLGNMLNIATRNKILKIMPVVMLILGGLFILRGLELGIPYLSPKKEALSIENKMSPENKG
HHSCH

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1332 RA0C_RS08490 WP_004916708.1 1784266..1785003(-) (RA0C_RS08490) [Riemerella anatipestifer ATCC 11845 = DSM 15868]
ATGGAAATAACTCTCATCATAGCAGCACTTACTTTGGGTTTCACAACAGGACTCCATTGTATTGGTATGTGCGGACCTAT
AGCTCTTTCTTTAGGACTTTCAAGAAAAAAACAGGTTAACTTTCATCTTCAAAATATAACCTATCAATTAGGAAGAATTT
TCACTTATTCTATATTGGGAATTTTACTAGGACTAATTGGAGAAGGCTTTCAGCTAGCGGGAGTTCAAGGTTGGCTTACC
ATTTTTGCAGGAATCATTTTAATCATAATGGCTCTTTTTTCTTTCGGGAACGGAGATTTTGCTTCTAAAATACCTTTTCT
CTCGAAATTTCTATTAAAAATAAAACTCAACCTAGGAAAATTATTATCCAAAACCGATTACTCCTCAAGGTTTTTAACAG
GAGTGCTTAATGGCTTTTTACCATGTGGAATGGTTTATGTAGCCTTGGCAGCATCTCTAGCAGCTGGTGGAGCTATACAA
GGAGGATTATTTATGATGTTATTTGGACTAGGAACTTTCCCTTTTATGTTTATTACTGTTTTATTAGGTAACATGCTTAA
TATAGCTACTAGAAATAAAATCCTAAAAATAATGCCTGTAGTAATGCTTATCTTGGGTGGGCTCTTTATACTAAGAGGTT
TAGAGTTAGGAATCCCTTATTTATCACCAAAGAAAGAAGCTCTTAGCATAGAAAACAAAATGTCCCCTGAAAACAAGGGA
CATCATAGTTGTCATTAA

Domains

Predicted by InterproScan.

Cytochrome C biogenesis protein transmembrane region (DsbD_2)

(8-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4TCY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value

References

[1] Li Huang et al. (2021) Identification of the Natural Transformation Genes in Riemerella anatipestifer by Random Transposon Mutagenesis. Frontiers in Microbiology 12:712198. [PMID: 34566918]