Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OY17_RS11080 Genome accession   NZ_CP009938
Coordinates   2215229..2216008 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus sp. BH072 isolate honey     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2210229..2221008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OY17_RS11060 (OY17_11060) trmFO 2210916..2212223 (+) 1308 WP_014417766.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  OY17_RS11065 (OY17_11065) xerC 2212293..2213210 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  OY17_RS11070 (OY17_11070) hslV 2213226..2213771 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  OY17_RS11075 (OY17_11075) hslU 2213779..2215191 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  OY17_RS11080 (OY17_11080) codY 2215229..2216008 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OY17_RS11085 (OY17_11085) flgB 2216362..2216751 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  OY17_RS11090 (OY17_11090) flgC 2216751..2217203 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  OY17_RS11095 (OY17_11095) fliE 2217214..2217534 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  OY17_RS11100 (OY17_11100) fliF 2217577..2219187 (+) 1611 WP_014417768.1 flagellar basal-body MS-ring/collar protein FliF -
  OY17_RS11105 (OY17_11105) fliG 2219200..2220216 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  OY17_RS11110 (OY17_11110) fliH 2220209..2220964 (+) 756 WP_014417769.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=133149 OY17_RS11080 WP_003154263.1 2215229..2216008(+) (codY) [Bacillus sp. BH072 isolate honey]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=133149 OY17_RS11080 WP_003154263.1 2215229..2216008(+) (codY) [Bacillus sp. BH072 isolate honey]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATCACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment