Detailed information    

experimental Experimentally validated

Overview

Name   RA0C_RS06070   Type   Unclear
Locus tag   RA0C_RS06070 Genome accession   NC_017045
Coordinates   1261119..1262138 (+) Length   339 a.a.
NCBI ID   WP_004917115.1    Uniprot ID   -
Organism   Riemerella anatipestifer ATCC 11845 = DSM 15868     
Function   require for natural transformation   
Unclear

Function

RA0C_RS09855, RA0C_RS09870, RA0C_RS09875, RA0C_RS09880, RA0C_RS03780, RA0C_RS07335, RA0C_RS08100, RA0C_RS04070, RA0C_RS07455, RA0C_RS05975, RA0C_RS06070, and RA0C_RS08490 significantly affected the natural transformation frequency of RA.


Genomic Context

Location: 1256119..1267138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA0C_RS06060 (RA0C_1273) - 1256792..1259671 (+) 2880 WP_013446958.1 SusC/RagA family TonB-linked outer membrane protein -
  RA0C_RS06065 (RA0C_1274) - 1259684..1261090 (+) 1407 WP_004917116.1 SusD/RagB family nutrient-binding outer membrane lipoprotein -
  RA0C_RS06070 (RA0C_1275) RA0C_RS06070 1261119..1262138 (+) 1020 WP_004917115.1 alkaline phosphatase D family protein Unclear
  RA0C_RS06075 (RA0C_1276) - 1262200..1265355 (-) 3156 WP_004917112.1 efflux RND transporter permease subunit -
  RA0C_RS06080 (RA0C_1277) - 1265427..1266482 (-) 1056 WP_004917109.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 39587.30 Da        Isoelectric Point: 7.3908

>NTDB_id=1331 RA0C_RS06070 WP_004917115.1 1261119..1262138(+) (RA0C_RS06070) [Riemerella anatipestifer ATCC 11845 = DSM 15868]
MTLLKKLLSISIFSGLLIANAQEKFTIGIASCSKQDKDLSLLDKVVEKKPNLFIWMGDNIYGDTYDMKVLEAKYQKLTNN
PHFKNLKKNVPMLSTWDDHDYGWNDAGKEYPHKEASKALFLKYWEVNNKFRQTNPNGIYGVEYFTFKNKKIQIIILDTRF
NRDALCKFESTMPFGKNDYVPCRDTSKSFLGEAQWNWLEEILKTPADLRILVSSIQFSHEYNGWESWTNLPSQQQKMMDL
IKKTKAENLFVISGDVHWGELSKYSLPNQYPIYDLTSSGLTEKWPSLEPNKFRIGEAVVEPNYGIIEYDGENQITFKLYD
HKDILKLNYQLDLETLKFK

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=1331 RA0C_RS06070 WP_004917115.1 1261119..1262138(+) (RA0C_RS06070) [Riemerella anatipestifer ATCC 11845 = DSM 15868]
ATGACATTACTAAAAAAATTACTTTCAATATCTATATTTTCTGGACTACTCATTGCTAATGCTCAAGAGAAATTTACCAT
AGGAATAGCCTCTTGTTCTAAACAAGATAAAGACTTATCACTATTAGATAAAGTGGTTGAAAAGAAACCCAACTTATTTA
TATGGATGGGAGATAACATCTATGGAGACACCTACGATATGAAGGTTCTAGAAGCTAAGTATCAAAAATTAACCAACAAT
CCTCATTTTAAAAACCTAAAGAAAAATGTTCCGATGCTATCTACTTGGGACGACCACGACTATGGCTGGAATGATGCGGG
GAAAGAATACCCTCACAAAGAAGCTTCTAAAGCCTTGTTTTTAAAATATTGGGAGGTTAATAATAAATTCAGACAGACTA
ACCCTAACGGTATTTATGGAGTAGAATATTTCACTTTTAAAAACAAAAAAATTCAAATCATTATTTTAGACACTAGATTT
AATCGTGATGCTCTTTGTAAATTTGAAAGTACAATGCCTTTCGGAAAGAACGACTATGTTCCGTGCCGAGATACTTCTAA
AAGTTTTCTAGGAGAAGCTCAATGGAACTGGCTAGAGGAAATTCTAAAAACTCCTGCAGATTTAAGGATTTTGGTTTCTA
GTATCCAGTTCTCACACGAATACAATGGTTGGGAATCTTGGACAAACCTTCCTAGCCAACAACAAAAAATGATGGATTTA
ATTAAAAAAACTAAAGCCGAAAATCTTTTTGTAATATCTGGAGATGTACATTGGGGAGAGTTATCAAAGTACAGCCTACC
CAACCAATATCCTATCTATGATTTAACGTCTAGTGGATTAACCGAAAAATGGCCGTCCCTAGAGCCTAATAAATTTAGAA
TAGGAGAAGCTGTTGTAGAACCCAACTACGGAATAATAGAGTACGATGGAGAGAACCAAATCACATTTAAACTCTATGAC
CACAAAGATATTCTAAAGCTAAATTATCAACTAGATTTAGAGACTTTAAAATTTAAATAA

Domains

Predicted by InterproScan.

PhoD-like phosphatase (PhoD)

(29-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value

References

[1] Li Huang et al. (2021) Identification of the Natural Transformation Genes in Riemerella anatipestifer by Random Transposon Mutagenesis. Frontiers in Microbiology 12:712198. [PMID: 34566918]