Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | OK18_RS03190 | Genome accession | NZ_CP009928 |
| Coordinates | 689388..690041 (+) | Length | 217 a.a. |
| NCBI ID | WP_053327058.1 | Uniprot ID | A0A0G3LXU1 |
| Organism | Chryseobacterium gallinarum strain DSM 27622 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 684388..695041
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OK18_RS03175 (OK18_03180) | aceA | 684733..686013 (-) | 1281 | WP_053327056.1 | isocitrate lyase | - |
| OK18_RS03180 (OK18_03185) | aceB | 686123..687697 (-) | 1575 | WP_053327057.1 | malate synthase A | - |
| OK18_RS03185 (OK18_03190) | - | 687822..689300 (+) | 1479 | WP_050019874.1 | helix-turn-helix domain-containing protein | - |
| OK18_RS03190 (OK18_03195) | comF | 689388..690041 (+) | 654 | WP_053327058.1 | ComF family protein | Machinery gene |
| OK18_RS03195 (OK18_03200) | upp | 690170..690820 (-) | 651 | WP_053327059.1 | uracil phosphoribosyltransferase | - |
| OK18_RS03200 (OK18_03205) | der | 690953..692263 (-) | 1311 | WP_050019871.1 | ribosome biogenesis GTPase Der | - |
| OK18_RS03210 (OK18_03215) | - | 693395..693802 (+) | 408 | WP_053327060.1 | hypothetical protein | - |
| OK18_RS03215 (OK18_03220) | - | 693856..694245 (+) | 390 | WP_053327061.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25089.04 Da Isoelectric Point: 8.3613
>NTDB_id=133023 OK18_RS03190 WP_053327058.1 689388..690041(+) (comF) [Chryseobacterium gallinarum strain DSM 27622]
MILDLLFPNRCIHCNRIISPELLVCNVCFDHIHFTHYDFSGNNPVREKCKLLFPVENTYALMQFEEQGLSRKIIHELKYR
SREKAGKTLAEWTAERLDFRDKTPDLMVSVPLHPKKLKERGYNQLHLFTETLSILYGIPYHHELIKRNHYSKAQALKDRE
HRLSTANAFSLTQAVTGKHILLIDDVFTTGNTVSSIAWELLNAGNNKVSVLVMAMDL
MILDLLFPNRCIHCNRIISPELLVCNVCFDHIHFTHYDFSGNNPVREKCKLLFPVENTYALMQFEEQGLSRKIIHELKYR
SREKAGKTLAEWTAERLDFRDKTPDLMVSVPLHPKKLKERGYNQLHLFTETLSILYGIPYHHELIKRNHYSKAQALKDRE
HRLSTANAFSLTQAVTGKHILLIDDVFTTGNTVSSIAWELLNAGNNKVSVLVMAMDL
Nucleotide
Download Length: 654 bp
>NTDB_id=133023 OK18_RS03190 WP_053327058.1 689388..690041(+) (comF) [Chryseobacterium gallinarum strain DSM 27622]
ATGATACTTGACTTACTTTTCCCTAACCGCTGCATTCACTGCAATAGAATTATCAGCCCTGAACTTCTGGTTTGTAATGT
ATGTTTTGACCACATTCATTTTACCCATTATGATTTTTCCGGCAATAATCCGGTCAGGGAAAAGTGTAAATTGCTGTTCC
CTGTTGAAAACACTTATGCTTTGATGCAGTTTGAGGAACAAGGTTTAAGCCGTAAAATCATTCATGAACTTAAATACAGA
AGCAGAGAAAAGGCAGGAAAAACACTCGCGGAATGGACGGCGGAACGACTGGATTTTAGAGACAAAACACCGGATCTTAT
GGTAAGTGTCCCGCTACATCCGAAAAAATTAAAGGAAAGAGGATATAACCAGCTTCATTTATTTACAGAGACATTATCAA
TATTGTATGGTATTCCGTACCACCATGAACTTATTAAAAGAAATCATTATTCAAAAGCACAGGCATTGAAAGACAGGGAG
CATCGTTTAAGTACAGCTAACGCTTTCTCACTTACCCAGGCTGTTACAGGGAAACATATCCTTTTGATTGATGATGTTTT
TACAACCGGGAATACGGTTTCATCTATCGCATGGGAGCTTTTAAATGCCGGAAACAATAAAGTAAGTGTTCTGGTAATGG
CGATGGATCTTTAA
ATGATACTTGACTTACTTTTCCCTAACCGCTGCATTCACTGCAATAGAATTATCAGCCCTGAACTTCTGGTTTGTAATGT
ATGTTTTGACCACATTCATTTTACCCATTATGATTTTTCCGGCAATAATCCGGTCAGGGAAAAGTGTAAATTGCTGTTCC
CTGTTGAAAACACTTATGCTTTGATGCAGTTTGAGGAACAAGGTTTAAGCCGTAAAATCATTCATGAACTTAAATACAGA
AGCAGAGAAAAGGCAGGAAAAACACTCGCGGAATGGACGGCGGAACGACTGGATTTTAGAGACAAAACACCGGATCTTAT
GGTAAGTGTCCCGCTACATCCGAAAAAATTAAAGGAAAGAGGATATAACCAGCTTCATTTATTTACAGAGACATTATCAA
TATTGTATGGTATTCCGTACCACCATGAACTTATTAAAAGAAATCATTATTCAAAAGCACAGGCATTGAAAGACAGGGAG
CATCGTTTAAGTACAGCTAACGCTTTCTCACTTACCCAGGCTGTTACAGGGAAACATATCCTTTTGATTGATGATGTTTT
TACAACCGGGAATACGGTTTCATCTATCGCATGGGAGCTTTTAAATGCCGGAAACAATAAAGTAAGTGTTCTGGTAATGG
CGATGGATCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
53.704 |
99.539 |
0.535 |