Detailed information    

experimental Experimentally validated

Overview

Name   RA0C_RS05975   Type   Unclear
Locus tag   RA0C_RS05975 Genome accession   NC_017045
Coordinates   1239627..1240589 (-) Length   320 a.a.
NCBI ID   WP_004917163.1    Uniprot ID   E4TCA9
Organism   Riemerella anatipestifer ATCC 11845 = DSM 15868     
Function   require for natural transformation   
Unclear

Function

RA0C_RS09855, RA0C_RS09870, RA0C_RS09875, RA0C_RS09880, RA0C_RS03780, RA0C_RS07335, RA0C_RS08100, RA0C_RS04070, RA0C_RS07455, RA0C_RS05975, RA0C_RS06070, and RA0C_RS08490 significantly affected the natural transformation frequency of RA.


Genomic Context

Location: 1234627..1245589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA0C_RS05955 (RA0C_1252) - 1235023..1237149 (-) 2127 WP_004917168.1 peptidylprolyl isomerase -
  RA0C_RS05960 (RA0C_1253) - 1237297..1237638 (+) 342 WP_004917166.1 phosphomannose isomerase type II C-terminal cupin domain -
  RA0C_RS05965 (RA0C_1254) - 1237651..1238589 (+) 939 WP_004917165.1 glycosyl transferase family 90 -
  RA0C_RS05970 (RA0C_1255) - 1238590..1239624 (-) 1035 WP_004917164.1 glycosyltransferase -
  RA0C_RS05975 (RA0C_1256) RA0C_RS05975 1239627..1240589 (-) 963 WP_004917163.1 hypothetical protein Unclear
  RA0C_RS05980 (RA0C_1257) - 1240593..1241585 (-) 993 WP_004917162.1 hypothetical protein -
  RA0C_RS05985 (RA0C_1258) - 1241578..1242393 (-) 816 WP_004917161.1 DUF5672 family protein -
  RA0C_RS05990 (RA0C_1259) rocD 1242394..1243647 (-) 1254 WP_004917159.1 ornithine--oxo-acid transaminase -
  RA0C_RS05995 (RA0C_1260) accC 1243770..1245125 (-) 1356 WP_004917157.1 acetyl-CoA carboxylase biotin carboxylase subunit -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37588.96 Da        Isoelectric Point: 7.8184

>NTDB_id=1330 RA0C_RS05975 WP_004917163.1 1239627..1240589(-) (RA0C_RS05975) [Riemerella anatipestifer ATCC 11845 = DSM 15868]
MKKILFIAPDYYGFNEVVYDGLKKYSNAKVTHVVSAYTQRYKYKHIGERIQNLFMKTFLGRNLKDERQYGELKEVVRNSD
FFDQIIINRPDVLSTDDLIRLKSKTNMLKAFFWDSIEKIPSQRDSIAYFDKCFSFDSLDCEKYGFEKNTNFFFAPTMPNQ
DIIYDVLFLGTQDGRIDKLVKILEHLNRIGYHSRALLYNHYSSEESEYSKSPFITITNKLIPFSQSYKISSQSRILLDLA
QDNQAGLSFRPFEALGLQKKMITDNPNILNYDFYSPENICLIDPENIKISEDFFSKPYKPLDTAILGKYSLEHWIHNIIK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=1330 RA0C_RS05975 WP_004917163.1 1239627..1240589(-) (RA0C_RS05975) [Riemerella anatipestifer ATCC 11845 = DSM 15868]
ATGAAGAAAATTCTTTTTATCGCTCCAGATTATTATGGATTTAATGAAGTGGTGTATGATGGGCTGAAGAAATACAGTAA
TGCCAAAGTTACTCATGTTGTGAGTGCTTATACGCAACGATATAAGTATAAGCACATTGGTGAGCGTATTCAAAATCTAT
TTATGAAAACATTTTTAGGAAGAAATCTTAAAGATGAAAGGCAATATGGAGAATTAAAAGAAGTAGTTCGTAATTCAGAT
TTTTTTGATCAAATAATCATAAATCGTCCAGATGTTTTGTCTACAGATGATTTAATTCGGCTAAAATCTAAAACGAATAT
GTTGAAGGCTTTCTTCTGGGATAGTATAGAAAAAATTCCTAGTCAAAGAGATAGTATTGCTTATTTTGATAAATGTTTTA
GTTTTGATTCTTTGGATTGCGAAAAGTATGGTTTTGAGAAGAATACTAATTTTTTCTTTGCTCCTACAATGCCTAATCAG
GATATTATTTACGATGTGTTATTTTTAGGAACACAAGATGGTAGGATTGATAAGCTTGTGAAAATTTTGGAACATTTAAA
TCGTATAGGATACCATTCAAGGGCTCTTTTGTACAATCATTATTCCAGCGAAGAATCAGAATATTCCAAGAGTCCTTTTA
TTACAATCACTAATAAATTAATTCCCTTTTCTCAATCTTATAAAATTAGTAGTCAATCTCGTATTTTGCTGGATTTGGCA
CAGGATAACCAGGCGGGATTGTCTTTCAGGCCTTTTGAGGCTTTGGGGCTCCAGAAAAAAATGATTACAGATAATCCCAA
TATTTTAAATTATGATTTTTATTCTCCAGAGAATATTTGTTTGATTGATCCTGAAAATATTAAAATTTCGGAAGACTTTT
TTAGCAAACCTTATAAGCCGTTAGATACGGCTATTTTGGGTAAATATTCATTGGAGCATTGGATTCATAACATAATTAAG
TAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4TCA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value

References

[1] Li Huang et al. (2021) Identification of the Natural Transformation Genes in Riemerella anatipestifer by Random Transposon Mutagenesis. Frontiers in Microbiology 12:712198. [PMID: 34566918]