Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BG04_RS08135 Genome accession   NZ_CP009920
Coordinates   1457608..1459965 (-) Length   785 a.a.
NCBI ID   WP_034648822.1    Uniprot ID   A0A0B6AAI8
Organism   Priestia megaterium NBRC 15308 = ATCC 14581     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1452608..1464965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG04_RS08120 (BG04_1603) alaS 1452918..1455551 (-) 2634 WP_034648824.1 alanine--tRNA ligase -
  BG04_RS08125 (BG04_1604) - 1455940..1457001 (-) 1062 WP_013059290.1 AI-2E family transporter -
  BG04_RS29625 (BG04_1605) - 1457115..1457249 (-) 135 WP_013059291.1 YrzQ family protein -
  BG04_RS08130 (BG04_1606) - 1457275..1457466 (-) 192 WP_013059292.1 hypothetical protein -
  BG04_RS08135 (BG04_1607) recD2 1457608..1459965 (-) 2358 WP_034648822.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BG04_RS08140 (BG04_1608) - 1459990..1460649 (-) 660 WP_013085089.1 tetratricopeptide repeat protein -
  BG04_RS08145 (BG04_1609) mnmA 1460807..1461919 (-) 1113 WP_034648820.1 tRNA 2-thiouridine(34) synthase MnmA -
  BG04_RS08150 (BG04_1610) - 1462026..1463168 (-) 1143 WP_034648817.1 cysteine desulfurase family protein -
  BG04_RS08155 (BG04_1611) cymR 1463192..1463608 (-) 417 WP_013059297.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88846.28 Da        Isoelectric Point: 5.0673

>NTDB_id=132951 BG04_RS08135 WP_034648822.1 1457608..1459965(-) (recD2) [Priestia megaterium NBRC 15308 = ATCC 14581]
MNEEQVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSIRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=132951 BG04_RS08135 WP_034648822.1 1457608..1459965(-) (recD2) [Priestia megaterium NBRC 15308 = ATCC 14581]
ATGAACGAAGAACAAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCGATTGTAACCGTCTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTCA
CAGGTTATTTTCCTAAGCTGAATGAAGATGAAGTATACACGTTTTACGGAGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAGTTTCATGTTGAACAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTGTCTAGCGATTTATT
TCACGGAATCGGTAAAAAAACTGCTGAAAACATTGTGGACGCTCTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCTGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAAGCTTTAGTCACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACAGACCTTGGATTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAGGGTATTGGCTTTAGCAGGGCCGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCAGGTATTTTATATGTCATTGAGCAAGAA
TGCAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGAAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTCTATGCTGAAAAAGGGCTGGTTAAAGCTATTCAAAAAATTATGGCTCAAACGCAGTAC
GAAGAGCAGTTTCCAGAATCAGAATTCTTATTGGCACTGGGTGAACTAGAAGAGCGATTAGACGTGCAATATGCACCTTC
TCAGCGCAAGGGCATACAAACCGCTTTAATGTCTCCGATGCTTCTCTTAACAGGTGGACCAGGTACAGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTCTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGATTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTGGCACCTACTGGACGCGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCAGCAGTTACCAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGATCATAATGAGGAAAATCCAATTGACGGAAAATTACTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAATCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTGAGTTCAGAAGTAGTTCCTAC
CGTCCGTCTTACAGATGTATACCGGCAAGCGGAAGGATCGTCAATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCAAGGCAGCAAGGAGATCGTTCTTTTATTCGTTGTCAAGGACAGCACATCACGAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTCTAGCTCCTATGTATAAAGGTCCTGC
AGGTATTGATAAGCTGAATGAAGTTCTTCAGGAATTATTCAACCCGGCTTCCGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATCACGTACCGAGTGGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCGGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAATGAAGT
AACTTACACAAAGCAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCACAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCAATTGTTAAAAGCTATTACCGGATGCTGCGACGCAATTTACTTTATACCGCTGTTACGCGAAGC
AAACAGTTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGCGTCAGCCGAAATGAAGACAGCATCCGACAAAC
GAATTTACAGCCGTTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B6AAI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.811

99.618

0.636

Multiple sequence alignment