Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | BF27_RS19965 | Genome accession | NZ_CP009902 |
| Coordinates | 3443231..3444010 (+) | Length | 259 a.a. |
| NCBI ID | WP_042514126.1 | Uniprot ID | - |
| Organism | Bacillus anthracis strain 2002013094 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3404407..3478338 | 3443231..3444010 | within | 0 |
Gene organization within MGE regions
Location: 3404407..3478338
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BF27_RS19775 (BF27_3687) | rsmB | 3404565..3405899 (+) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| BF27_RS19780 (BF27_3688) | rlmN | 3405904..3406992 (+) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| BF27_RS19785 (BF27_3689) | - | 3406997..3407749 (+) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| BF27_RS19790 (BF27_3690) | prkC | 3407758..3409731 (+) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| BF27_RS19795 (BF27_3691) | rsgA | 3410000..3410881 (+) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| BF27_RS19800 (BF27_3692) | rpe | 3410884..3411528 (+) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| BF27_RS19805 (BF27_3693) | - | 3411628..3412308 (+) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| BF27_RS19810 | spoVM | 3412375..3412455 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| BF27_RS19815 (BF27_3694) | rpmB | 3412528..3412716 (-) | 189 | WP_000124778.1 | 50S ribosomal protein L28 | - |
| BF27_RS19820 (BF27_3695) | - | 3413095..3413457 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| BF27_RS19825 (BF27_3696) | - | 3413480..3415156 (+) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| BF27_RS19830 (BF27_3697) | recG | 3415446..3417494 (+) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| BF27_RS19835 (BF27_3698) | fapR | 3417583..3418176 (+) | 594 | WP_000747355.1 | transcription factor FapR | - |
| BF27_RS19840 (BF27_3699) | plsX | 3418173..3419165 (+) | 993 | WP_000684111.1 | phosphate acyltransferase PlsX | - |
| BF27_RS19845 (BF27_3700) | fabD | 3419180..3420124 (+) | 945 | WP_000516948.1 | ACP S-malonyltransferase | - |
| BF27_RS19850 (BF27_3701) | fabG | 3420124..3420864 (+) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| BF27_RS19855 (BF27_3702) | acpP | 3420934..3421167 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| BF27_RS19860 (BF27_3703) | rncS | 3421226..3421963 (+) | 738 | WP_001146873.1 | ribonuclease III | - |
| BF27_RS19865 (BF27_3704) | smc | 3422110..3425679 (+) | 3570 | WP_000478986.1 | chromosome segregation protein SMC | - |
| BF27_RS19870 (BF27_3705) | ftsY | 3425695..3426684 (+) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| BF27_RS19875 (BF27_3706) | - | 3426818..3427150 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| BF27_RS19880 (BF27_3707) | ffh | 3427163..3428512 (+) | 1350 | WP_000863456.1 | signal recognition particle protein | - |
| BF27_RS19885 (BF27_3708) | rpsP | 3428613..3428885 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| BF27_RS19890 (BF27_3709) | - | 3428900..3429127 (+) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| BF27_RS19895 (BF27_3710) | rimM | 3429248..3429763 (+) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| BF27_RS19900 (BF27_3711) | trmD | 3429763..3430497 (+) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BF27_RS19905 (BF27_3712) | rplS | 3430644..3430988 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| BF27_RS19910 (BF27_3713) | lepB | 3431090..3431641 (+) | 552 | WP_000711857.1 | signal peptidase I | - |
| BF27_RS19915 (BF27_3714) | ylqF | 3431662..3432552 (+) | 891 | WP_000236696.1 | ribosome biogenesis GTPase YlqF | - |
| BF27_RS19920 (BF27_3715) | rnhB | 3432604..3433377 (+) | 774 | WP_001174712.1 | ribonuclease HII | - |
| BF27_RS19925 (BF27_3716) | sucC | 3433571..3434731 (+) | 1161 | WP_001020786.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| BF27_RS19930 (BF27_3717) | sucD | 3434752..3435654 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| BF27_RS19935 (BF27_3718) | dprA | 3435742..3436611 (+) | 870 | WP_000818036.1 | DNA-processing protein DprA | - |
| BF27_RS19940 (BF27_3719) | topA | 3436756..3438834 (+) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| BF27_RS19945 (BF27_3720) | trmFO | 3438885..3440189 (+) | 1305 | WP_009879846.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| BF27_RS19950 (BF27_3721) | xerC | 3440255..3441154 (+) | 900 | WP_001101227.1 | tyrosine recombinase XerC | - |
| BF27_RS19955 (BF27_3722) | hslV | 3441197..3441739 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| BF27_RS19960 (BF27_3723) | hslU | 3441762..3443153 (+) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| BF27_RS19965 (BF27_3724) | codY | 3443231..3444010 (+) | 780 | WP_042514126.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| BF27_RS19970 (BF27_3725) | rpsB | 3444361..3445062 (+) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| BF27_RS19975 (BF27_3726) | tsf | 3445166..3446053 (+) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| BF27_RS19980 (BF27_3727) | pyrH | 3446120..3446842 (+) | 723 | WP_000042663.1 | UMP kinase | - |
| BF27_RS19985 (BF27_3728) | frr | 3446845..3447402 (+) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| BF27_RS19990 (BF27_3729) | uppS | 3447488..3448264 (+) | 777 | WP_000971301.1 | isoprenyl transferase | - |
| BF27_RS19995 (BF27_3730) | cdsA | 3448282..3449073 (+) | 792 | WP_000813581.1 | phosphatidate cytidylyltransferase | - |
| BF27_RS20000 (BF27_3731) | dxr | 3449097..3450239 (+) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| BF27_RS20005 (BF27_3732) | rseP | 3450256..3451512 (+) | 1257 | WP_001090228.1 | RIP metalloprotease RseP | - |
| BF27_RS20010 (BF27_3733) | - | 3451622..3453322 (+) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| BF27_RS20015 (BF27_3734) | - | 3453447..3457748 (+) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| BF27_RS20020 (BF27_3735) | rimP | 3458081..3458551 (+) | 471 | WP_000359093.1 | ribosome maturation factor RimP | - |
| BF27_RS20025 (BF27_3736) | nusA | 3458569..3459675 (+) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| BF27_RS20030 (BF27_3737) | rnpM | 3459687..3459959 (+) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| BF27_RS20035 (BF27_3738) | - | 3459960..3460271 (+) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| BF27_RS20040 (BF27_3739) | infB | 3460276..3462336 (+) | 2061 | WP_000036340.1 | translation initiation factor IF-2 | - |
| BF27_RS20045 (BF27_3740) | - | 3462333..3462614 (+) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| BF27_RS20050 (BF27_3741) | rbfA | 3462630..3462986 (+) | 357 | WP_000776441.1 | 30S ribosome-binding factor RbfA | - |
| BF27_RS20055 (BF27_3742) | truB | 3463073..3463996 (+) | 924 | WP_000399357.1 | tRNA pseudouridine(55) synthase TruB | - |
| BF27_RS20060 (BF27_3743) | ribF | 3464040..3465011 (+) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| BF27_RS20065 (BF27_3744) | rpsO | 3465112..3465381 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| BF27_RS20070 (BF27_3745) | pnp | 3465542..3467681 (+) | 2140 | Protein_3573 | polyribonucleotide nucleotidyltransferase | - |
| BF27_RS20075 (BF27_3746) | - | 3467833..3468732 (+) | 900 | WP_000647530.1 | polysaccharide deacetylase family protein | - |
| BF27_RS20080 (BF27_3747) | - | 3468819..3470060 (+) | 1242 | WP_000592993.1 | M16 family metallopeptidase | - |
| BF27_RS20085 (BF27_3748) | - | 3470187..3470438 (+) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| BF27_RS20090 (BF27_3749) | dpaA | 3470713..3471615 (+) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| BF27_RS20095 (BF27_3750) | dpaB | 3471612..3472211 (+) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| BF27_RS20100 (BF27_3751) | asd | 3472362..3473408 (+) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| BF27_RS20105 (BF27_3752) | dapG | 3473432..3474664 (+) | 1233 | WP_000692470.1 | aspartate kinase | - |
| BF27_RS20110 (BF27_3753) | dapA | 3474676..3475554 (+) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| BF27_RS20120 (BF27_3754) | - | 3476325..3477995 (+) | 1671 | WP_000823085.1 | ribonuclease J | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28721.00 Da Isoelectric Point: 4.7153
>NTDB_id=132829 BF27_RS19965 WP_042514126.1 3443231..3444010(+) (codY) [Bacillus anthracis strain 2002013094]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESCSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESCSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=132829 BF27_RS19965 WP_042514126.1 3443231..3444010(+) (codY) [Bacillus anthracis strain 2002013094]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGTGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGTGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
80.695 |
100 |
0.807 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.275 |
98.456 |
0.456 |