Detailed information    

experimental Experimentally validated

Overview

Name   RA0C_RS07455   Type   Unclear
Locus tag   RA0C_RS07455 Genome accession   NC_017045
Coordinates   1570511..1571143 (-) Length   210 a.a.
NCBI ID   WP_004916257.1    Uniprot ID   -
Organism   Riemerella anatipestifer ATCC 11845 = DSM 15868     
Function   require for natural transformation   
Unclear

Function

RA0C_RS09855, RA0C_RS09870, RA0C_RS09875, RA0C_RS09880, RA0C_RS03780, RA0C_RS07335, RA0C_RS08100, RA0C_RS04070, RA0C_RS07455, RA0C_RS05975, RA0C_RS06070, and RA0C_RS08490 significantly affected the natural transformation frequency of RA.


Genomic Context

Location: 1565511..1576143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA0C_RS07450 (RA0C_1556) - 1567552..1570158 (-) 2607 WP_004916255.1 TonB-dependent receptor -
  RA0C_RS07455 (RA0C_1557) RA0C_RS07455 1570511..1571143 (-) 633 WP_004916257.1 NAD(P)H-dependent oxidoreductase Unclear
  RA0C_RS07460 (RA0C_1558) - 1571229..1572839 (+) 1611 WP_004916258.1 hypothetical protein -
  RA0C_RS07465 (RA0C_1559) - 1572968..1573732 (+) 765 WP_004916259.1 NUMOD4 domain-containing protein -
  RA0C_RS07470 (RA0C_1560) hflX 1573798..1575018 (-) 1221 WP_004916260.1 GTPase HflX -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 6.6409

>NTDB_id=1327 RA0C_RS07455 WP_004916257.1 1570511..1571143(-) (RA0C_RS07455) [Riemerella anatipestifer ATCC 11845 = DSM 15868]
MNYIDALNKRYSVKKFDTEKKVTEETLNRILEAGRLSASSLGLQPYRVLVISSPSKKEDLASAFYNPSQTSTCSHLLVII
SKKELEKNYVDNYFDLIVKERQVSLDLLQPFRNSVEGYINRHNSETLPYWNEKQAYILLSNFIFSAALEGVDTCPMEGFD
AHKVAEVLDIDSSKEIPTVCLALGYRAHDDLFQHGKKVRKPSDDLFQFIK

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1327 RA0C_RS07455 WP_004916257.1 1570511..1571143(-) (RA0C_RS07455) [Riemerella anatipestifer ATCC 11845 = DSM 15868]
ATGAATTATATAGACGCACTAAACAAACGCTACTCTGTAAAAAAATTTGATACTGAAAAAAAAGTTACAGAGGAAACCCT
AAATCGTATATTAGAAGCTGGTAGACTATCTGCAAGTTCTCTAGGGCTACAACCTTACAGAGTTTTAGTTATTTCTTCTC
CTTCAAAAAAGGAAGATTTAGCTTCAGCTTTTTATAACCCTTCACAGACTTCTACTTGTTCGCATTTATTAGTCATTATT
TCTAAAAAGGAATTAGAGAAAAACTATGTAGATAACTACTTTGACCTTATTGTTAAAGAACGCCAAGTTTCCCTAGACCT
ATTACAGCCTTTCAGAAATAGTGTAGAAGGCTATATCAATAGACATAACAGCGAAACTCTACCTTATTGGAATGAAAAAC
AAGCTTACATATTACTAAGCAACTTTATATTTTCAGCCGCTTTAGAGGGAGTAGATACTTGCCCTATGGAGGGATTCGAC
GCTCATAAAGTAGCAGAAGTTTTAGACATAGATTCTTCTAAGGAAATCCCTACGGTATGTTTAGCATTAGGTTATAGAGC
TCACGATGATTTATTTCAACATGGTAAAAAAGTAAGAAAACCTTCTGATGATTTGTTTCAATTCATTAAATAA

Domains

Predicted by InterproScan.

Nitroreductase family (Nitroreductase)

(8-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value

References

[1] Li Huang et al. (2021) Identification of the Natural Transformation Genes in Riemerella anatipestifer by Random Transposon Mutagenesis. Frontiers in Microbiology 12:712198. [PMID: 34566918]