Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FORC4_RS00825 Genome accession   NZ_CP009847
Coordinates   182906..183631 (-) Length   241 a.a.
NCBI ID   WP_025545500.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_004     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 177906..188631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC4_RS00800 (FORC4_0147) - 179025..179516 (+) 492 WP_005458943.1 type II secretion system protein M -
  FORC4_RS00805 (FORC4_0148) - 179518..180279 (+) 762 WP_021486905.1 type II secretion system protein N -
  FORC4_RS00810 (FORC4_0149) cysQ 180566..181393 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FORC4_RS00815 (FORC4_0150) nudE 181434..182003 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  FORC4_RS00820 (FORC4_0151) nfuA 182224..182808 (-) 585 WP_057619139.1 Fe-S biogenesis protein NfuA -
  FORC4_RS00825 (FORC4_0152) comF 182906..183631 (-) 726 WP_025545500.1 amidophosphoribosyltransferase Machinery gene
  FORC4_RS00830 (FORC4_0153) bioH 183716..184483 (+) 768 WP_029786485.1 pimeloyl-ACP methyl ester esterase BioH -
  FORC4_RS00835 (FORC4_0154) - 184607..185071 (+) 465 WP_005459035.1 hypothetical protein -
  FORC4_RS00840 (FORC4_0155) - 185207..187528 (-) 2322 WP_025508777.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27814.91 Da        Isoelectric Point: 8.8467

>NTDB_id=132539 FORC4_RS00825 WP_025545500.1 182906..183631(-) (comF) [Vibrio parahaemolyticus strain FORC_004]
MLSHHWQNIMHRVLSSQCGLCRFPIQATDQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=132539 FORC4_RS00825 WP_025545500.1 182906..183631(-) (comF) [Vibrio parahaemolyticus strain FORC_004]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGATCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTATGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment